| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_0188 |
|---|
| Symbol | |
|---|
| ID | 3916176 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Novosphingobium aromaticivorans DSM 12444 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007794 |
|---|
| Strand | + |
|---|
| Start bp | 191828 |
|---|
| End bp | 193351 |
|---|
| Gene Length | 1524 bp |
|---|
| Protein Length | 507 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640442914 |
|---|
| Product | fumarase |
|---|
| Protein accession | YP_495471 |
|---|
| Protein GI | 87198214 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1838] Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain
[COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
|---|
| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGGAAA TGGTGACGAT CAAGGAAGCG GACCTGATCG AAAGCGTTGC GGATGCGCTT
CAATACATCA GCTATTTCCA CCCGATGGAC TACATCCGCG CGCTGGGTGA GGCCTACAAG
GCCGAGCAGG GGCCAGCGGC CAAGGACGCC ATCGCCCAGA TCCTCACCAA CAGCCGCATG
TGCGCCGAAG GGCATCGCCC GATCTGCCAG GACACCGGCA TCGTCAACGT CTTCATCGAG
TGGGGCCAGG ACTGCCGCCT CGAAAGCGAC CTTTCGTTGC AGGATGTGGT CGATGAGGGC
GTGCGCCGTG CCTACAACAA TCCCGACAAC AAGCTGCGCG CGTCGGTTCT TGCCGATCCC
GCATTCACCC GCCGCAACAC CCGCGACAAC ACGCCCTGTG TGCTGCACGT GGAAATGGTC
AAGGGCAACA AGGTGACGGT CGATGTTGCC GCCAAGGGAG GCGGGTCGGA GAACAAGTCG
AAGTTCAAGA TGATGAACCC CAGCGATTCG ATCGTCGACT GGGTGATCGA GATGCTGCCC
CAGATGGGCG CCGGCTGGTG CCCGCCGGGC ATGCTCGGCA TTGGCATCGG CGGCACCGCG
GAACACTGCG TGCTGCTCGC CAAGAAGGCG CTGATGGAGC CGATCGATAT GGCCCAGCTC
AAGCAGCGCG GGCCGCAGAC CGACATCGAA CGCCTGCGCA TCGAGATCTT CGACAAGGTC
AACGCGCTTG GCATCGGCGC GCAGGGGCTG GGCGGGCTTT CCACCATCCT CGACGTCAAG
ATCATGGACG CGCCGTGCCA TGCCGCCGGC AAGCCGGTGG CGATGATCCC CAATTGCGCG
GCAACCCGCC ATGCGCACTT CACGCTCGAC GGGTCGGGGC CGACCTTCCT CGAGCGACCC
AAGCTCGATG AATGGCCGGA AGTGCACTGG GCGCCGGACT CGGCGGCAAG GCGCGTCGAT
CTCGATACGC TGACGCAGGA AGAGGTGCAG AGCTGGAAGG CGGGCGACCG CCTGCTCCTG
AACGGCAAGA TGCTGACGGG CCGCGATGCC GCGCACAAGC GGATCAAGGA CATGCTCGCC
AAGGGCGAGG AACTGCCCGT CGATTTCAAG GGCCGCGTGA TCTACTACGT CGGCCCGGTC
GATCCGGTGC GCGACGAAGT CGTCGGCCCG GCCGGCCCCA CCACGGCCAC CCGCATGGAC
AGCTTCTCCG ACACCATGCT CGACCTCGGC CTGCTCGCCA GCGTCGGCAA GGCCGAGCGT
GGCCCTGCCG CGACCCAGTC CATCGCCAAC CACAAGAGCG CCTATCTGAT GGCGGTGGGC
GGAGCGGCCT ATCTTGTCGC CCGCGCGATC AAGGAGGCGA AGGTCGTCGG CTTCGAGGAC
CTCGGCATGG AGGCGATCTA CGAATTCACC GTCGAGGACA TGCCGGTGAC CGTGGCCGTC
GATTCCGGGG GCCAGAACGT TCACCAGCTC GCGCCGCTGG TGTGGAAGAA GAAGATCGCC
GAGGAACACC TCCTTCCGGC CTGA
|
|---|
| Protein sequence | MAEMVTIKEA DLIESVADAL QYISYFHPMD YIRALGEAYK AEQGPAAKDA IAQILTNSRM
CAEGHRPICQ DTGIVNVFIE WGQDCRLESD LSLQDVVDEG VRRAYNNPDN KLRASVLADP
AFTRRNTRDN TPCVLHVEMV KGNKVTVDVA AKGGGSENKS KFKMMNPSDS IVDWVIEMLP
QMGAGWCPPG MLGIGIGGTA EHCVLLAKKA LMEPIDMAQL KQRGPQTDIE RLRIEIFDKV
NALGIGAQGL GGLSTILDVK IMDAPCHAAG KPVAMIPNCA ATRHAHFTLD GSGPTFLERP
KLDEWPEVHW APDSAARRVD LDTLTQEEVQ SWKAGDRLLL NGKMLTGRDA AHKRIKDMLA
KGEELPVDFK GRVIYYVGPV DPVRDEVVGP AGPTTATRMD SFSDTMLDLG LLASVGKAER
GPAATQSIAN HKSAYLMAVG GAAYLVARAI KEAKVVGFED LGMEAIYEFT VEDMPVTVAV
DSGGQNVHQL APLVWKKKIA EEHLLPA
|
|---|
| |