Gene Saro_0108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_0108 
Symbol 
ID3915994 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand- 
Start bp112945 
End bp113574 
Gene Length630 bp 
Protein Length209 aa 
Translation table11 
GC content62% 
IMG OID640442833 
Productcell wall hydrolase, SleB 
Protein accessionYP_495391 
Protein GI87198134 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3773] Cell wall hydrolyses involved in spore germination 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCACGA AGTTCCGATA CGCGGCGACG CTGAGCATTG CTGCGACTTT TATCACAACC 
CTTCTCAGCA CGAGCGGATC CCACGCCGCC GCACAGGGCA TCAACGCCCC CGTCGCATCC 
GTGACGACAT TCATCTCCCA GCCCGTGGTG CAGCCCGTTG CCAAGCCGAC GGCCGCAATC 
GCTACCCAGG CATCCGAAGG CGAAGCTGGC GAAGCCGCTT CCTCGCTTGC CGAACTGGTC 
GAGAACACCC AGGCCCCCGA TTCGCTTTCC AATGAACTGG AATGCCTCGC AGGTGCCATC 
TTCTTCGAAG CGAAGAGCGA ATCGCTTGCC GGGCAGCTTG CCGTCGGCCG CGTGATCGTC 
GCCCGCGCCA ATTCCGGTCG CTTCCCCTCT TCCTATTGCG GTGTGGTGTT CCAGCCCTCG 
CAGTTCTCCT TCATTCGCGG CCACGCGATG CCGGCCATCA ACCGCAACAG CCGCGCCTGG 
CAGAATGCCG TGCGTATTGC CGTGATTGCC GACGAAGGTC TTTGGAAAAG CCCGGTCGAA 
GGTGCGATGT TCTTCCACGC CTCGCACGTC TCGCCCCGTT GGGGGAAGGT GCGCATGGCC 
AGGGTGGATA GCCACATCTT CTATCGCTGA
 
Protein sequence
MSTKFRYAAT LSIAATFITT LLSTSGSHAA AQGINAPVAS VTTFISQPVV QPVAKPTAAI 
ATQASEGEAG EAASSLAELV ENTQAPDSLS NELECLAGAI FFEAKSESLA GQLAVGRVIV 
ARANSGRFPS SYCGVVFQPS QFSFIRGHAM PAINRNSRAW QNAVRIAVIA DEGLWKSPVE 
GAMFFHASHV SPRWGKVRMA RVDSHIFYR