Gene Saro_0105 details

Gene Information

• Locus tag: Saro_0105
• ID: 3915991
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Novosphingobium aromaticivorans DSM 12444
• Kingdom: Bacteria
• Replicon accession: NC_007794
• Strand: +
• Start bp: 107549
• End bp: 109435
• Gene Length: 1887 bp
• Protein Length: 628 aa
• Translation table: 11
• GC content: 68%
• IMG OID: 640442830
• Product: heparinase II/III-like
• Protein accession: YP_495388
• Protein GI: 87198131
• COG category: [S] Function unknown
• COG ID: [COG5360] Uncharacterized protein conserved in bacteria

Plasmid Coverage information

• Num covering plasmid clones: 28
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAAAACA GCGGCTTCCC CGTCATCGGA AGCCGCCAGG CGGCCAAGGC GCCGCACGAG 
TCGGCGATTC CGCTGGCAGG CTCGAGGGAG GAACCGCTGG TCGATATCGC TGACAGCTAT 
CTTCCCCTCG ACGAGGACCA GACCGCCGCT CCCATCGCCG ATCCGACCGC GGTGGAGCCG 
GGACGTTCGC TCGCGCTTGC CGATTTCGCC CCGCCCGCAC TTGGCGCGGG AGACCGGCTG 
GTCCGGCTCG CCTATCGGAT GGGCCTTCCC GCGAGCGCGA TCCATCCCTT CCGCAAGCGG 
GCGAAGACAA GGCTGACGGC AACAGTTACG CCGCCCCTCC CCGGAGATCC GGCGGCCGGC 
AAGGCACTGC GTGCGGGGCA TTTCCTAGTC CACGGCTTCA AGTCGCCAAT TGCCGACACC 
GCATTTTCGG GCCCGCGCCT GCCACCGCCG TTCGAACGGA TGGTTCACGG CTTTCGGTGG 
TTGCGCGATC TCGAGTCGGG CGGGACGCGG GCGCAGTGCA CGCAAGTGGC CGAACGCATC 
CTGGCAACCT GGCTGAAGGC AAACCCCAAG CCGAACCCGA CGCCCGCATG GGATGTGGGC 
AACGTCGGCC ATCGCCTGCT CAACTGGATG ATCCATGCGC CGCTCGTCCT GTCTGGCCAG 
GACCGCGGCT TCCGCAGCCG CATGCTGCAC ACGATCGAGG ATACCGCACG CTGGCTCGAC 
CGGCACGTCG CCAAGGCTGA CGACCGGCTA GGTGAAGTGG CGGGCTGGTG CGCCATCGTT 
GCCACCGGCC TGCTCATGGC CGACGGAAAG CCACGCCGCC TCTATGGCGA AGCCGGCCTA 
GTACGCGCGC TGGGCGAACT GGTCAGCGAC GATGGCGGCG TATTGTCGCG CAGCCCGCTC 
TGCCAGATCG AGGCGATAGA ACTGCTCGTC AGCCTGCGCG CCTGCTACGA CGCGATACGG 
TCGGAACCGC TGCCGCAGAT CGGGACCATG CTGAACCTGC TGGTTCCGCC GCTGCTAGCG 
CTGCTGCATG GCGATGGCGG ACTGGGCAAC TGGCAGGGCG CAGGGGCCAT CGAGGCTGAC 
CGGATCGAGG AACTGGTCCG GGCAACCGGC GTGCGCACCC GTCCGCTGCG CGATGCACGC 
CAGTGGGGTT ACCAGCGCGC AACGGCAGGC AAGGCCGTGC TCCAGTTCGA TGCAGGGCCA 
CCACCCGTGG CCCGCCACGC GCGCGACGGA TGCGCTTCTA CCCTGGCTTT CGAGTTCAGC 
CATGGACCGG ACCGGCTCAT CGTCAACTGC GGCGGCGCGG CGTTTGCCGG CGGACTGATT 
CCCCTGCGGC TTGAGCAGGG CCTGCGCGCG ACGGCTGCGC ATTCGACGCT GACCATCGAC 
GATTTCAACT CAACCGCAGT CCTCATCAAC GGTCGCCTCG GTTCGGGCGT TTCGGAGGTC 
GAGGTCGACA GGCGTACGCT TTCCGCCGAC GGCAACGGTC CGGGCGCGAC GCGCATCGAG 
GCCAGCCACA ACGGCTATGT GGGGCGCTAT GGCCTGACCC ATCGCCGCAT CCTGATCCTG 
CGCGACGATG GCAGCGAACT GCGCGGCGAA GACCTTCTGG TGCCAGCAGG GCGCAAGGGC 
AAGCGCGGAA CCATCGGCGT CGCCTTGCGA TTCCATCTCG GTCCGCATAT CGAGCTCGCC 
ACCAGTGCGG ACGGGAAAGG CGTGACGCTC GCCCTGCCCG ACGGGAGCCT GTGGCAGTTC 
CGCTCGGGCC GCGATGCGGT GTCGGTCGAG GAAAGCCTCT GGGCAGACGG GCAGGGACGC 
CCGCTGGCAA CGCGCCAGCT TGTCGTCACA GCCAAGGTTC CACGCAGCGG AGAGAGCTTC 
TCCTGGCTGC TCAAGAAGAT GAGATAG 

 

Protein sequence

MENSGFPVIG SRQAAKAPHE SAIPLAGSRE EPLVDIADSY LPLDEDQTAA PIADPTAVEP 
GRSLALADFA PPALGAGDRL VRLAYRMGLP ASAIHPFRKR AKTRLTATVT PPLPGDPAAG 
KALRAGHFLV HGFKSPIADT AFSGPRLPPP FERMVHGFRW LRDLESGGTR AQCTQVAERI 
LATWLKANPK PNPTPAWDVG NVGHRLLNWM IHAPLVLSGQ DRGFRSRMLH TIEDTARWLD 
RHVAKADDRL GEVAGWCAIV ATGLLMADGK PRRLYGEAGL VRALGELVSD DGGVLSRSPL 
CQIEAIELLV SLRACYDAIR SEPLPQIGTM LNLLVPPLLA LLHGDGGLGN WQGAGAIEAD 
RIEELVRATG VRTRPLRDAR QWGYQRATAG KAVLQFDAGP PPVARHARDG CASTLAFEFS 
HGPDRLIVNC GGAAFAGGLI PLRLEQGLRA TAAHSTLTID DFNSTAVLIN GRLGSGVSEV 
EVDRRTLSAD GNGPGATRIE ASHNGYVGRY GLTHRRILIL RDDGSELRGE DLLVPAGRKG 
KRGTIGVALR FHLGPHIELA TSADGKGVTL ALPDGSLWQF RSGRDAVSVE ESLWADGQGR 
PLATRQLVVT AKVPRSGESF SWLLKKMR