Gene Saro_0104 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_0104 
Symbol 
ID3915990 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand+ 
Start bp106888 
End bp107547 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content64% 
IMG OID640442829 
Productribulose-5-phosphate 3-epimerase 
Protein accessionYP_495387 
Protein GI87198130 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0036] Pentose-5-phosphate-3-epimerase 
TIGRFAM ID[TIGR01163] ribulose-phosphate 3-epimerase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACTCCGC TGATCTCACC TTCCATCCTC TCAGCCGATT TTGCCCGCCT GGGCGAGGAA 
GTGCGCGCAA TCGACGCCGC CGGGGCCGAC TGGATCCATG TCGATGTCAT GGACGGCCAC 
TTCGTGCCCA ACATCACCAT CGGGCCGATG GTCGTAAAGG CGCTGCGCCC GCACACGACC 
AAGCCTTTTG ACGTGCATCT GATGATCTCC CCGGTCGACG GCTATCTCCA GGCCTTTGCC 
GATGCCGGCG CGGACATCAT CACCGTCCAC CCCGAGGCGG GGCCGCACAT CCACCGCACC 
GTCCAGGCGA TCAAGGCGCT GGGCAAGAAG GCCGGCGTCT CTCTGAACCC GGGCACGCCG 
GCAAAGATGC TCGACTACCT GATCGACGAC GTCGACCTCG TGCTGGTGAT GAGCGTGAAC 
CCCGGTTTCG GCGGACAGAG CTTCATTTCC AGCCAGCTTC GCAAGATCGA GGCGGTGCGC 
AAGATGATCG ACAAGTCGGG ACGGGACATC CACCTCGAGG TCGATGGCGG CGTTGATACC 
AGAACGATCC GCTCCTGCGT CGACGCAGGC GCCGACGTCC TGGTCGCCGG GACCGCGACC 
TTCAAGGGTG GGCCTTCGCA ATATGCGGCC AACATCGCCG CGCTGAAGGG TCTCGGCTGA
 
Protein sequence
MTPLISPSIL SADFARLGEE VRAIDAAGAD WIHVDVMDGH FVPNITIGPM VVKALRPHTT 
KPFDVHLMIS PVDGYLQAFA DAGADIITVH PEAGPHIHRT VQAIKALGKK AGVSLNPGTP 
AKMLDYLIDD VDLVLVMSVN PGFGGQSFIS SQLRKIEAVR KMIDKSGRDI HLEVDGGVDT 
RTIRSCVDAG ADVLVAGTAT FKGGPSQYAA NIAALKGLG