Gene Saro_0055 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSaro_0055 
Symbol 
ID3917652 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNovosphingobium aromaticivorans DSM 12444 
KingdomBacteria 
Replicon accessionNC_007794 
Strand
Start bp56435 
End bp57826 
Gene Length1392 bp 
Protein Length463 aa 
Translation table11 
GC content67% 
IMG OID640442780 
ProductC-terminal processing peptidase-3 
Protein accessionYP_495338 
Protein GI87198081 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0793] Periplasmic protease 
TIGRFAM ID[TIGR00225] C-terminal peptidase (prc) 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCACGCTC ACTCGCGAAA GGCCCCCAGG GCAATGAAGT CCGCCTCCTT CAAGTTCGCC 
GGACTCCTGC GCGTCACCGC GCTCGTTTCT GCCGTCGCGC TCATTCCCGC CACGACCGCC
GGCCTCGCTG CGGTCGATGC CCGCACCGGC CCCGAATTCG GCAAGCTCAT CGCGGTCTAC
GAGCGGGTGA AGGCCAACTA CGTCGAGCCG GTCGACGACG AGAAGCTCCT CAAGGGCGCG
ATCGACGGCA TGCTCGCCAC GCTCGACCCC CACAGCTCCT ATCTCGACGC CCGCGATTTC
GAGAACCTGC GCACCCAGAC CGAAGGCTCC TACGGCGGCC TCGGCCTGTC GGTCACGATG
GACGACGGCG CGGTGAAGGT CATCGCGCCG ACCAAGGGCA GCCCCGCAGA CCTCGCCGGG
GTCAAGGCGG GCGATTTCAT CACGCACCTC GATGGCAAGC TGATCTACGG CGGCTCGCTT
GACGAGGCGG TCGACCAGAT GCGCGGCGTG CCGGGCACCA AGATCCGCCT GTCGGTCTTC
CGCCCCGGCC GCGACGAGCC GTTCGACGTG ACCATCACCC GCCAGATCAT CGAACTAAAG
CCGGTGGAGT GGGAAATGCG CGGCAACGTC GGGGTCATCT CGGTCTCCAG CTTCAGCGCG
GACGTCGGCA CCTCTGTCCA GAAGGCGTGG AACGAAATCC GCGCCAGGTC GGGCGGCAAG
GTCGCGGGCC TCGTGCTCGA CCTGCGCGGC AATCCGGGCG GACTGCTCGA CGAGGCGGTC
GCCCTGTCGG ACCTGTTCCT CGACAAGGGC ACGATCGTGT CGCAGCGTGG CCGGTATGCC
CGGGACAACG AGGTCTACCC GGCCGAGATC GATACCAAGG GCGACATCGC CAAGGGCACG
CCGATGATCG TGCTGATCGA CGAAGGCTCC GCCTCCGCGT CCGAGATCGT CGCCGGCGCG
CTCCAGGACC AGCACCGCGC GGTCGTGATG GGCCAGCGCA GCTTCGGCAA GGGCAGCGTG
CAGACGCTGA TCCCGCTGAC GCGCGACACC GCCATCAAGC TCACCACCGC GCGCTACTAT
ACGCCTTCGG GCCGTTCGGT GCAGGAAGGC GGGATCGAGC CCGATATCGC CGTGCCGCAG
ATTTCCGATC CCGACCTGCG CAAGCGCCAG CTTCGCTCCT ACCGCGAGAG CGACCTGCGC
GGCCACCTGA TCAACGAGAT CAAGCTCGAG GACAAGGATC TCGAGAAGGA CAAGACCGAA
GACCCGCGCT TCAAGATGAC GGCGGAAGAG CTGAAGGCGA AGGACATCAA GGATTTCCAG
CTCTACTACG CGGTCCAGAC CCTGTCGCGC ACCGCGCCCC GTGGTGCACT TGCGGCGAAG
GTGAAGGGAT AA
 
Protein sequence
MHAHSRKAPR AMKSASFKFA GLLRVTALVS AVALIPATTA GLAAVDARTG PEFGKLIAVY 
ERVKANYVEP VDDEKLLKGA IDGMLATLDP HSSYLDARDF ENLRTQTEGS YGGLGLSVTM
DDGAVKVIAP TKGSPADLAG VKAGDFITHL DGKLIYGGSL DEAVDQMRGV PGTKIRLSVF
RPGRDEPFDV TITRQIIELK PVEWEMRGNV GVISVSSFSA DVGTSVQKAW NEIRARSGGK
VAGLVLDLRG NPGGLLDEAV ALSDLFLDKG TIVSQRGRYA RDNEVYPAEI DTKGDIAKGT
PMIVLIDEGS ASASEIVAGA LQDQHRAVVM GQRSFGKGSV QTLIPLTRDT AIKLTTARYY
TPSGRSVQEG GIEPDIAVPQ ISDPDLRKRQ LRSYRESDLR GHLINEIKLE DKDLEKDKTE
DPRFKMTAEE LKAKDIKDFQ LYYAVQTLSR TAPRGALAAK VKG