Gene Saro_0043 details

Gene Information

• Locus tag: Saro_0043
• Symbol: mnmA
• ID: 3917640
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Novosphingobium aromaticivorans DSM 12444
• Kingdom: Bacteria
• Replicon accession: NC_007794
• Strand: +
• Start bp: 46499
• End bp: 47653
• Gene Length: 1155 bp
• Protein Length: 384 aa
• Translation table: 11
• GC content: 70%
• IMG OID: 640442768
• Product: tRNA-specific 2-thiouridylase MnmA
• Protein accession: YP_495326
• Protein GI: 87198069
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0482] Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain
• TIGRFAM ID: [TIGR00420] tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase

Plasmid Coverage information

• Num covering plasmid clones: 36
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCCCGGA CATCCGCACT TTCAGGCGCT TCCTCGCTGT TCGATCTCGA TGGACCGATG 
TCCGCGCGGC GCATCGTCGT CGCCATGTCG GGCGGCGTCG ACAGTTCCGT CGTCGCAGGG 
CTCGCCGCGG CAACCGGCGC GGAAGTGATC GGCGTCACGC TCCAGCTTTA CGATTACGGC 
GCGGCGACGG GCCGCAAGGG CGCCTGCTGC GCCGGTGACG ACATCCGCGA CGCCCGCGCC 
GTCGCCGACC GCCTCGGCAT TGCGCACTAC GTCTTCGATC ACGAATCGAG CTTCCGCGAG 
GAGGTGGTGG AGAGGTTCGC CGACGACTAC CTTTCGGGCC GCACGCCGAT CCCCTGCGTC 
CGTTGCAACA TGGGGCCCAA GTTCACCGAC CTCCTGGCAA TGGCGCGCGA GCTTGGCGCC 
GACTGCCTTG CGACCGGGCA CTATGTCCGG CGCGTCATGG GCCCGGCCGG CCCCGAACTG 
CACCGCGCGG TCGATCCGGC GCGCGACCAG TCGTACTTCC TGTACGGCAC GACCGAGGAG 
CAGCTCGCCT TCCTGCGCTT TCCGCTGGGC GGGCTGCCCA AGACGGAGAC CCGCCTGATC 
GCCGAGGAGC TGGGCCTCGC GGTCGCCGCC AAGCCGGACA GCCAGGACAT CTGCTTCGTA 
CCCGATGGCG ACTATGCCAG GGTCGTGCGC AGCGTCCGTC CGGAAGGCGA CGCCCCGGGC 
GAGATCGTAC ATGCCGCCAC CGGCGAGGTT CTCGGCACGC ATCGCGGCAT CATCCACTAT 
ACTGTCGGCC AGCGCCGCGG GCTCGAGATC GGCGGCCAGC CGGAGCCGCT CTACGTGATC 
GGCCTCGATG CGCCCTCGCG TCGCGTGCTG GTGGGGCCGC GTCCGATGCT GGCGGTCGCC 
AGCGCGACGA TCGTCGAAAC CAATCGCATC GGCCCGCTGC CCGATGCCCC GCTCACCGCC 
AAGGTCCGCT CGCTCGCAAG GCCGGTCCCG GTCGTGCTCG AAGGATCGTT CGGCGAAGGG 
GCAAGCGCGC GCATCCGCTT TTCGCAGCCC GAATACGGCG TCGCACCGGG GCAGGCCGCC 
GTGCTTTATG CCGGAGACCG AGTCGTCGGC GGCGGCTGGA TCGATTCGAC CGAGCGGTGG 
GAGATTGAGG GCTGA 

 

Protein sequence

MPRTSALSGA SSLFDLDGPM SARRIVVAMS GGVDSSVVAG LAAATGAEVI GVTLQLYDYG 
AATGRKGACC AGDDIRDARA VADRLGIAHY VFDHESSFRE EVVERFADDY LSGRTPIPCV 
RCNMGPKFTD LLAMARELGA DCLATGHYVR RVMGPAGPEL HRAVDPARDQ SYFLYGTTEE 
QLAFLRFPLG GLPKTETRLI AEELGLAVAA KPDSQDICFV PDGDYARVVR SVRPEGDAPG 
EIVHAATGEV LGTHRGIIHY TVGQRRGLEI GGQPEPLYVI GLDAPSRRVL VGPRPMLAVA 
SATIVETNRI GPLPDAPLTA KVRSLARPVP VVLEGSFGEG ASARIRFSQP EYGVAPGQAA 
VLYAGDRVVG GGWIDSTERW EIEG