| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Saro_0024 |
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| Symbol | rpoB |
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| ID | 3916027 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Novosphingobium aromaticivorans DSM 12444 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007794 |
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| Strand | - |
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| Start bp | 23796 |
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| End bp | 27974 |
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| Gene Length | 4179 bp |
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| Protein Length | 1392 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 640442749 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_495307 |
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| Protein GI | 87198050 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTACCA AGGCGACGTC TAGCAGGACG ACTGGCCGCC CCGGCGTGAA GAAGCGCATC
CGCAAGATCT TCGGTGACAT TCACGAAGTC GTGCAGATGC CGAATCTGAT CGAGGTCCAG
CGCGAATCGT ACGAGCAGTT CCTTCGCTCC GATCCCGCCA CGGGCTACGT CTCGGGCCTG
GAGAAGACCC TGCGCTCGGT CTTCCCGATC CAGGACTTCG CCGGGACCGC CAGCCTCGAT
ATCAAGGAAA AGGACGGCTA CGTCCTTGAA TCGCCCAAGT ACGACGTGAA CGAATGCCGC
CAGCGCGGCA TCACTTACGC CGCGCCGATG AAGGTAACGC TCAAGCTCGC GACCTTCGAA
GTGGACGCCG AGACCGAGAC GAAGTCGCTC ATCGATATCA AGGAGCAGGA CGTCTACATG
GGCGACATCC CGCTCATGAC CGAGAACGGG ACGTTCTTCA TCAACGGCAC CGAGCGCGTG
ATCGTCTCGC AGATGCACCG TTCGCCGGGC GTGCTGTTCG ATCATGACCG CGGCAAGACC
CACTCGTCGG GCAAGTACCT CTTCGCCGCC CGCGTGATCC CTTATCGTGG TTCGTGGCTC
GACTTCGAGT TCGACGCCAA GGACATCGTC AACGTCCGCA TCGACCGCAA GCGCAAGCTG
CCCGTCACCG CGCTGCTCCA CGCGCTGGGC CTGGGCGACG AGGACATCCT GCACCATTTC
TACGACACCG TGACCTGGGC TCGCGCCGAG GGCGGCTGGA AGGTGCCCTT CGTGCTTGAA
CAGTGGCGCG GATCGAAGCC GGCGTTCGAC ATCGTCGACG CCAAGTCGGG CGAAGTGATC
TTCCCGGCCG GCCAGAAGAT CAGCCCGCGT GCAGCCAACA AGGCCGCGAA GGACGGGCTC
GAGGCGCTGC TCATCCCGAC CGAGGAAATC TTCGGCCGCT ATGCCGCGCG CGACCTCATC
GACGAGTCGA CCGGCCGCAT CTGGATCGAA GCCGGCGATG AAGTCAGCCC CGAGAACCTC
GACCTGCTCG ACAAGGCGGG CATCGACAAT CTCGACCTGC TCGACATCGA CCACATCTCG
ACCGGGCCGT GGATCCGCAA CACGCTCAAG GCCGACAAGG CTCCGGATCG TGATCACGCG
CTGGCCGACA TCTACCGCGT CATGCGCCCC GGCGAACCGC CGACGCGCGA AACCGCCGAA
GCGCTGTTCG ACGGCCTGTT CTTCGACGGG GATCGCTACG ACCTCTCGGC CGTGGGCCGC
GTGAAGCTGA ACATGCGTCT CGGCCTGGAT TGCCCGGACA CGGTCACCAC CCTGCGCACC
GACGACATCC TCGCGGTGGT CAAGGAGCTG GTGAACCTCA AGGACGGCAA GGGCGAAGTC
GACGACATCG ACAACCTCGG CAACCGCCGC GTGCGTTCGG TGGGCGAACT GCTCGAGAAC
CAGTATCGCG TCGGCCTGCT GCGCATGGAA CGCGCGGTCA AGGAGCGCAT GTCGTCGGTC
GACGTGTCGA CCGTCATGCC GAACGACCTG ATCAACGCCA AGCCTGCCGT GGCCGCGGTG
CGCGAGTTCT TCGGTTCGTC GCAGCTCTCG CAGTTCATGG ACCAGACCAA CCCGCTGTCC
GAAGTCACCC ACAAGCGCCG CGTTTCGGCG CTCGGGCCGG GTGGTCTGAC CCGCGAGCGC
GCTGGCTTCG AAGTCCGCGA CGTCCACCCG ACGCACTACG GCCGTATCTG CCCGATCGAA
ACGCCGGAAG GCCCGAACAT CGGCCTGATC AACTCGCTGT CGACTTTCGC GCGCGTCAAC
AAGTACGGCT TCATCGAAAC CCCGTACCGC AAGGTCGTGG ACGGCAAGGT GACCAAGGAC
GTCATCTACC TGTCGGCGAT GGAAGAGCAG AAGCACACCG TTGCCCAGGC TTCGGCCGAA
CTGACCGCCG ACGGCTCGTT CGTCGAAGAG CTCGTCTCGG CCCGTCAGAA CGGTGAATTC
GTGATGGCTC CGCGCGACAC GGTCACGCTG ATGGACGTTT CGCCCAAGCA GCTCGTCTCG
GTCGCGGCCT CGCTCATTCC GTTCCTGGAA AACGACGACG CCAACCGCGC GCTCATGGGC
TCGAACATGC AGCGCCAGGC CGTGCCGCTG ATCAAGGCGG ATGCGCCTTT CGTCGGCACC
GGCATGGAAG AGACCGTGGC CCGCGACTCG GGCGCTGCGA TCTCGGCACT GCGCTCGGGC
GTGGTCGACC AGGTCGACGC AACCCGTATC GTGATCCGCG CCTCGGGCGA TATCGAACCC
GGCCAGTCGG GCGTCGACAT CTACCGCCTG CAGAAGTTCG AGCGCTCGAA CCAGTCGACC
TGCATCAACC AGCGTCCGCT GGTGAAGGTG GGCGACCTGA TCGAGAAGGG AGACATCATC
GCCGATGGTC CCTCGACCGA GTTCGGCGAA CTGGCGCTGG GCCGCAACGT GCTCGTCGCG
TTCATGCCCT GGAACGGCTA CAACTACGAA GACTCGATCC TGATCAGCGA ACGCATCGTG
AAGGAAGACG TCTTCACCTC GATCCACATC GAGGAGTTCG AGGTCATGGC CCGCGACACC
AAGCTCGGGC CGGAGGACAT CACCCGCGAC ATCCCTAACG TCGGCGAGGA AGCCCTGCGC
AACCTCGACG AAGCGGGCAT CGTCTACATC GGCGCGGAAG TTCACCCTGG CGACATTCTC
GTCGGCAAGA TCACCCCGAA GGGTGAATCG CCGATGACGC CGGAAGAGAA GCTGCTGCGT
GCGATCTTCG GCGAAAAGGC CAGCGACGTG CGCGACACCT CGCTTCGCCT GCCCCCGGGC
GTCGCCGGCA CGATCGTCGA CGTGCGCGTG TTCAACCGTC ACGGCATCGA GATCGACGAC
CGTACCCGCG CGATCCAGAA TGAGGAAATC GAACGCCTCG CCAAGGACCG CGAGGACGAG
CGCGCCATTC TCAACCGCGC GACCTTCAAC CGCCTGAAGG ACATGCTGCT CGGCCAGGTG
GCCGCAGCTG CGCCCAAGGG CATCAAGAAG GGTGTCGAGA TCGACGAGCA GGTCCTTGCC
GATGTCGAGC GTCACGAATG GTGGAAGTTC GCGGTCGCCG ACGACGCGCG CCAGCAGCAG
CTGGAAGCGG TCAAGGCGCA GTACGACACG GCCGTCAAGG CGATCCAGGA GAAGTTCGAG
GACCGCAAGG AAAAGCTCGA GCGTGGCGAT GAACTCGCTC CGGGCGTGCT CAAGATGGTC
AAGGTCTTCG TCGCGGTGAA GCGCAAGCTG CAGCCGGGCG ACAAGATGGC CGGCCGTCAC
GGCAACAAGG GCATCATCAG CCGCATCCTG CCGCAGGAAG ACATGCCGTT CCTCGAGGAC
GGCACGCCGG TCGACTTCGT GCTCAACCCG CTGGGCGTGC CGTCGCGCAT GAACGTCGGG
CAGATCTTCG AAACGCACCT TGGCTGGGCC GCCCGTGGCC TTGGCAAGCG CATCGGCGAG
GCTCTCGACG CATGGCGTGA GGCCAACCCG AACCCCGAAG CCGGCCAGCC GCCGGAAGCT
GTGCGTGAGT TGCTCAAGGA GATCTACGGC GACAACTACG CAGCCGAGAT CGACGCCCGC
AACGACGAGC AGATCATCGA CTTCGCCCAG TCGGTTCGCC TTGGCGTGCC GATGGGTTCG
CCGGTGTTCG ACGGCGCGGT CGAGAAGGAC GTGACCGACA TGCTGCGTCT CGCCGGGCTC
GATGAATCGG GTCAGGTGAC GCTGTTCGAC GGCCGCACCG GCGACGCGTT CGACCGCAAG
GTCACCGTGG GCATGAAGTA CGTGCTGAAG CTGCACCACC TTGTCGACGA CAAGATCCAC
GCACGTTCGA TCGGGCCTTA CTCGCTCGTC ACCCAGCAGC CGCTGGGCGG CAAGGCGCAG
TTCGGCGGCC AGCGCTTCGG CGAAATGGAG GTCTGGGCGC TCCAGGCCTA CGGCGCGGCC
TACACGCTGC AGGAAATGCT GACGGTGAAG TCGGACGACG TGGTCGGCCG CACCAAGGTC
TACGAAGCGA TCGTCAAGGG CGACGATACC TTCGAGGCCG GCATTCCCGA GAGCTTCAAC
GTGCTCGTCA AGGAAATGCG CTCGCTGGGC CTCAACGTCG AACTGTCGTC GCTCGACGAC
ACGGATGACG ACGACGGTCT CGCCGAGGCG GCGGAGTAA
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| Protein sequence | MATKATSSRT TGRPGVKKRI RKIFGDIHEV VQMPNLIEVQ RESYEQFLRS DPATGYVSGL
EKTLRSVFPI QDFAGTASLD IKEKDGYVLE SPKYDVNECR QRGITYAAPM KVTLKLATFE
VDAETETKSL IDIKEQDVYM GDIPLMTENG TFFINGTERV IVSQMHRSPG VLFDHDRGKT
HSSGKYLFAA RVIPYRGSWL DFEFDAKDIV NVRIDRKRKL PVTALLHALG LGDEDILHHF
YDTVTWARAE GGWKVPFVLE QWRGSKPAFD IVDAKSGEVI FPAGQKISPR AANKAAKDGL
EALLIPTEEI FGRYAARDLI DESTGRIWIE AGDEVSPENL DLLDKAGIDN LDLLDIDHIS
TGPWIRNTLK ADKAPDRDHA LADIYRVMRP GEPPTRETAE ALFDGLFFDG DRYDLSAVGR
VKLNMRLGLD CPDTVTTLRT DDILAVVKEL VNLKDGKGEV DDIDNLGNRR VRSVGELLEN
QYRVGLLRME RAVKERMSSV DVSTVMPNDL INAKPAVAAV REFFGSSQLS QFMDQTNPLS
EVTHKRRVSA LGPGGLTRER AGFEVRDVHP THYGRICPIE TPEGPNIGLI NSLSTFARVN
KYGFIETPYR KVVDGKVTKD VIYLSAMEEQ KHTVAQASAE LTADGSFVEE LVSARQNGEF
VMAPRDTVTL MDVSPKQLVS VAASLIPFLE NDDANRALMG SNMQRQAVPL IKADAPFVGT
GMEETVARDS GAAISALRSG VVDQVDATRI VIRASGDIEP GQSGVDIYRL QKFERSNQST
CINQRPLVKV GDLIEKGDII ADGPSTEFGE LALGRNVLVA FMPWNGYNYE DSILISERIV
KEDVFTSIHI EEFEVMARDT KLGPEDITRD IPNVGEEALR NLDEAGIVYI GAEVHPGDIL
VGKITPKGES PMTPEEKLLR AIFGEKASDV RDTSLRLPPG VAGTIVDVRV FNRHGIEIDD
RTRAIQNEEI ERLAKDREDE RAILNRATFN RLKDMLLGQV AAAAPKGIKK GVEIDEQVLA
DVERHEWWKF AVADDARQQQ LEAVKAQYDT AVKAIQEKFE DRKEKLERGD ELAPGVLKMV
KVFVAVKRKL QPGDKMAGRH GNKGIISRIL PQEDMPFLED GTPVDFVLNP LGVPSRMNVG
QIFETHLGWA ARGLGKRIGE ALDAWREANP NPEAGQPPEA VRELLKEIYG DNYAAEIDAR
NDEQIIDFAQ SVRLGVPMGS PVFDGAVEKD VTDMLRLAGL DESGQVTLFD GRTGDAFDRK
VTVGMKYVLK LHHLVDDKIH ARSIGPYSLV TQQPLGGKAQ FGGQRFGEME VWALQAYGAA
YTLQEMLTVK SDDVVGRTKV YEAIVKGDDT FEAGIPESFN VLVKEMRSLG LNVELSSLDD
TDDDDGLAEA AE
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