Gene RPB_4701 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_4701 
Symbol 
ID3912519 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp5321057 
End bp5322913 
Gene Length1857 bp 
Protein Length618 aa 
Translation table11 
GC content68% 
IMG OID637886606 
ProductATP-dependent DNA helicase, RecQ 
Protein accessionYP_488295 
Protein GI86751799 
COG category[L] Replication, recombination and repair 
COG ID[COG0514] Superfamily II DNA helicase 
TIGRFAM ID[TIGR00614] ATP-dependent DNA helicase, RecQ family
[TIGR01389] ATP-dependent DNA helicase RecQ 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCTCT CCGCCTCGCG CCACGCCTCC GACGACCTCG ATGCCCGCGC GCTGTCGACG 
CTGAATCACG TGTTCGGCCT GCCCGGCTTT CGCGGCCATC AGGAAGCGAT CATCCGCCAT
GTCGCGCATG GCGGCGATTG TCTGGTGCTG ATGCCGACCG GGGGCGGCAA GTCGCTGTGC
TACCAGTTGC CCGCCCTGTT GAGAGACGGC TGCGGCATCG TGGTGTCGCC GCTGATCGCG
CTGATGCGCG ACCAGGTGGC GGGGCTGCTG GAGGCCGGCG TGCGCGCCGC GGCGCTGAAT
TCCAGCCTAA GCTACGCCGA GGCCGACGCG ATCGAGCGGC AGCTGCTCGC CGGCGAACTC
GACCTTTTAT ACGTCGCCCC CGAACGCCTG CTGACACCGC GTTGCCTGGC GATGCTGGCG
CGGGCGAAAA TCGCGCTGTT CGCGATCGAC GAGGCGCATT GCGTGTCGCA ATGGGGCCAC
GACTTCCGGC CGGAATATGT CGGCCTCTCC GCCATCGCCG AGAAATTCCC CAACGTGCCG
CGGATCGCCC TGACCGCGAC CGCCGACGCA CTGACGCGGC GCGAGATCAG CGAGCGGCTC
GGCCTCACCG ACGCGCCCTG CTTCGTGTCG AGCTTCGACC GGCCGAACAT CCGCTACGCC
ATCGTCGACA AGCAGAATGC GCCGGCGCAG CTCAAGGCGT TCATCGCCGA CAAGCATATG
GGCCATTCCG GCGTGGTGTA TTGCCTGTCG CGCGCCAAGG TCGAGGACAT CGCCGACACG
CTGTGCAAGG CCGGCATCGA CGCGCTGCCC TATCACGCCG GTCTGCCGGC GGAGATCCGC
GCGCGCAATC AGGACCGCTT CATCAACGAG GACGGCGTGG TGATCGTCGC CACCATCGCG
TTCGGCATGG GCATCGACAA GCCCGACGTG CGCTTCGTCG CGCATCTCGA CCTGCCCAAG
AGCATCGAGG CCTATTATCA GGAGACCGGC CGCGCCGGCC GCGACGGCAA GCCGTCGGAT
GCCTGGATGG CCTACGGCCT TTCCGACATC GTGCAGCAGC GGCGGATGAT CGACGAATCC
TCCGGCTCCG ACGCCTTCAA GCGGGTGTCG ATGGGCAAGC TCGATGCGCT GGTCGGCCTG
TGTGAATCCA CCGCCTGCCG CCGCACCCGG CTGCTCGGCT ATTTCGGCGA GACGGCGCTC
GAGCCGCAGT GCGGCAATTG CGATAATTGT CTGTCGCCGC CCAAGGTGAT CGACGGCACC
GTGGCGGCGC AGAAGCTGCT GTCCTGCGCC TATCGCACCG GGCAGCGGTT CGGCGCCCAG
CATCTGATCG ACGTGCTGCT CGGCCGCCTG ACCGAGCGCG TCGGCCAGTT CGGCCACGAC
AAGCTCTCGG TGTTCGGCAT CGGCGGCGAA TTCAACGAGA AGCAATGGCG GGCGGTGATC
CGGCAATTGG TGTCGCTCGG GCACCTCGCG CCGGACAGCG AGGCGTTCGG CGCGCTGAAA
CTCACCGAGA GTTCGCGCGC GGTGCTGAAG GGCGACGCGC AGGTGATGCT GCGCGAGCAG
ACCGGCGGCC GGCCGCCGCG GGCGAAATCC CGCCGCGGCG ATCTGGTCGG CGGCGCGCCG
CGCGAATCGA CCGGCGATCC GGATCTGTTC GCGGCGCTGA AGGCGTGGCG CTCCGAGGTG
GCGAAGAGCC GCGGCGTGCC GGCCTATGTG GTGCTGCACG ACGCCACCAT GGACGGTATC
GCCGCAGTGC GCCCACGCTC GCTCGACGAA CTGCGCGGCA TTCCCGGGAT CGGCGACAAG
AAGCTGGAGC ATTATGGCCA GGAATTGCTG GCCCTGGTAA ATGCCTCAGG CAGCTGA
 
Protein sequence
MTLSASRHAS DDLDARALST LNHVFGLPGF RGHQEAIIRH VAHGGDCLVL MPTGGGKSLC 
YQLPALLRDG CGIVVSPLIA LMRDQVAGLL EAGVRAAALN SSLSYAEADA IERQLLAGEL
DLLYVAPERL LTPRCLAMLA RAKIALFAID EAHCVSQWGH DFRPEYVGLS AIAEKFPNVP
RIALTATADA LTRREISERL GLTDAPCFVS SFDRPNIRYA IVDKQNAPAQ LKAFIADKHM
GHSGVVYCLS RAKVEDIADT LCKAGIDALP YHAGLPAEIR ARNQDRFINE DGVVIVATIA
FGMGIDKPDV RFVAHLDLPK SIEAYYQETG RAGRDGKPSD AWMAYGLSDI VQQRRMIDES
SGSDAFKRVS MGKLDALVGL CESTACRRTR LLGYFGETAL EPQCGNCDNC LSPPKVIDGT
VAAQKLLSCA YRTGQRFGAQ HLIDVLLGRL TERVGQFGHD KLSVFGIGGE FNEKQWRAVI
RQLVSLGHLA PDSEAFGALK LTESSRAVLK GDAQVMLREQ TGGRPPRAKS RRGDLVGGAP
RESTGDPDLF AALKAWRSEV AKSRGVPAYV VLHDATMDGI AAVRPRSLDE LRGIPGIGDK
KLEHYGQELL ALVNASGS