| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4687 |
|---|
| Symbol | |
|---|
| ID | 3912505 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 5302184 |
|---|
| End bp | 5304649 |
|---|
| Gene Length | 2466 bp |
|---|
| Protein Length | 821 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637886592 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_488281 |
|---|
| Protein GI | 86751785 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3127] Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGGCGCG CGCTGTGGAT CCTCGCAGTG CTGCTGAGCC ATTGGCGTCG CCATCCGCTG
CAACTCGCCA CTTTGCTGAT CGGACTGATC TCGGCGACCG CGCTGTGGAG CGGCGTGCAG
GCGCTGAACG CGCAGGCGCG CACCAGCTAC GACCGTGCCG CGGCGACGCT CGGCGGCGCC
CGCACCGCGA CGCTGGTCGC GCCGGACGCC GAGCATTTTC CGCAAGCTTT GTTCGTCGAG
CTGCGCCGCG CCGGCTGGCA GGTCTCGCCG GTGATCGAAG GCCAAGTCCG GGTCGGCGGA
CGCACCCTGC GGCTGCTCGG GATCGAGCCG CTGTCGATGC CGGTCGAAGC CAGCGCCGCG
CCGGCGATCG GCACCGCCAA TCTGCAGGGC TTCATTCTGC CGCCCGGCCA GACGCTGCTG
TCGCCCGACA CGCTCGGCGC GTTGAAGCTC GCCGACGGTG CCACGCCGTA TATCAGCAAT
GGCGGCCAGT TGCCGCCGCT GAAGCCGCAA GCCGAAGTCG CACCCGGCGT GCTGGTGGTC
GACATCGGCA TCGCGCAGAA GCTGCTCGGA CTGCCCGATC AGGTGTCGCG CCTCCTGATC
GGCAGCAAGG TCGTGGCTTC GCGAACGCCG CTGCAAGACG TCGTCGGCGA CAAGCTCAAG
CGGGTCGAGC CCGACACCGA GACCGACCTC GAACGTCTCA CAGACAGCTT CCATCTCAAC
CTCACGGCGT TCGGCCTGCT GTCGTTCCTG GTCGGGCTGT TCATCGTCAA TTCGGCGATC
GGGCTCGCCT TCGAACAGCG GCGGCCGATG CTGCGGACGC TGCGCGCCTG CGGCGCGTCC
GCGCGGATGC TCAACAGCGT GATGGTGATC GAGCTGACGC TGATCGCGCT GGTCGCCGGA
CTGATCGGGC TGGTCTGCGG CTATCTGATC GCCGCGACGC TGCTGCCCGA CGTCGCCGCG
AGTCTCCGCG GTCTGTATGG CGCGCAGATT CCCGGCGAAT TGTCGCTGCG GCCGCAATGG
TGGCTGGCCG GCATCGCCAT CAGCATCCTC GGCGCGCTGG CGGCCGCCGC CGCGAGCCTG
ATCAAGGCGG CGCGAATGCC GGTGCTCGCC GCCGCGCAGG CGTTCGCCTG GCAACAGGCG
CAGCAGCGCT GGCTGCTGAT CCAGGGCAGC GTCGCGGTTC TGGTGTTCGC CGCCGCGGCC
GGCTTGCTGT GGTTCGGCGA TTCGCTGGTC TCCGGCTTTG CGGTGCTCGC CGCCATCCTG
CTCGGCGCAG CGCTCGGTCT GCCCGCCGTG CTCGGCCTGA TACTCGCGCT CGGCGAACGC
GGCGCGCGGC GTCCGCTGAT CAAATGGTTC TGGGCCGACA ACCGGCTGCA GCTCTCCGGC
CTATCGCTCG CTTTGATGGC GCTGCTGCTG GCGCTCGGCG TCAATATCGG CGTCGGCACC
ATGGTGGAGA GCTTCAGCCG CACCTTCGTG CGCTGGCTCG ACGGACGGCT GACGGCCGAA
GTCTATCTCA ACGCCGCCAA TGATGCGCAG GCGACCGAGA TCAAGGCGTG GGTGAAGCAG
CGCCCCGAAG TCACCGCGCT GCTGCCCGGC GCCCGCGCCG AGGTGAAGCT CGACGGCTGG
CCGGCCGAGA TCATCGGCTT TGCGGATGAT CCGACCTATC GCGACCACTG GCCGTTGCTC
GAACAGAGCC GCGATGTCTG GGACGCGGTC GCGCGCGGCG ACGCTGCGCT GATCAGCGAG
CAATTGTCAC GGCGGATGAA GCTCAGCCTC GGCGATCGCA TCGCGGTGCC GACCGGCAAC
GGCCCGTGGC CGCTCACCGT CGCGGCGATC TACGCCGATT ACGGCAATCC GCGCGGCCAG
ATCGGCGTCG CCTATGGGGC GCTGATCGCG CGCTTTCCGG AGGTGGCGCA GACCCGGTTC
GGGCTGCGGG TCGATCCTTC CCGCGTGCCG GCGCTGGTCG ACGATCTGCG CGCGACGTTC
AAGCTCGACA ATCGCAGCCT CGCCGATCAG GCGACGCTGA AAACCGAATC GAAGCGGATC
TTCAACCGCA CCTTCGCGGT CACCGCGGCG CTCAACGCTT TCACGCTCGG CATCGCCGGC
GTGGCGCTGC TGACGAGTCT CCTGACGCTC GGCAATTCGC GGCTGCCGCA GGTCGCGCCG
TTGTGGGCGA TCGGCATCAC CCGCCGACGA CTCGCCTTCA TTGAATTGAT GAAGACGCTG
TCGATGGCGG CGCTGACCGC GCTGCTGGCG CTGCCGCTCG GCCTGCTGGT GGCGTGGTGT
CTGATCGCGG TGGTCAACGT CAAGGCGTTC GGCTGGCGGC TGCCGTTCGA GGTGTTTCCA
TGGGAGCTTC TGAAACTGCT CGGCGTCGCG CTGCTGGCAT CGCTGATCGC GGCGGCGCTG
CCGATCCTCA AGCTGCTGCG GATGCAGCCG GCGCAACTGG TGAAGGTGTT CGCCGATGAG
CGCTAG
|
|---|
| Protein sequence | MRRALWILAV LLSHWRRHPL QLATLLIGLI SATALWSGVQ ALNAQARTSY DRAAATLGGA
RTATLVAPDA EHFPQALFVE LRRAGWQVSP VIEGQVRVGG RTLRLLGIEP LSMPVEASAA
PAIGTANLQG FILPPGQTLL SPDTLGALKL ADGATPYISN GGQLPPLKPQ AEVAPGVLVV
DIGIAQKLLG LPDQVSRLLI GSKVVASRTP LQDVVGDKLK RVEPDTETDL ERLTDSFHLN
LTAFGLLSFL VGLFIVNSAI GLAFEQRRPM LRTLRACGAS ARMLNSVMVI ELTLIALVAG
LIGLVCGYLI AATLLPDVAA SLRGLYGAQI PGELSLRPQW WLAGIAISIL GALAAAAASL
IKAARMPVLA AAQAFAWQQA QQRWLLIQGS VAVLVFAAAA GLLWFGDSLV SGFAVLAAIL
LGAALGLPAV LGLILALGER GARRPLIKWF WADNRLQLSG LSLALMALLL ALGVNIGVGT
MVESFSRTFV RWLDGRLTAE VYLNAANDAQ ATEIKAWVKQ RPEVTALLPG ARAEVKLDGW
PAEIIGFADD PTYRDHWPLL EQSRDVWDAV ARGDAALISE QLSRRMKLSL GDRIAVPTGN
GPWPLTVAAI YADYGNPRGQ IGVAYGALIA RFPEVAQTRF GLRVDPSRVP ALVDDLRATF
KLDNRSLADQ ATLKTESKRI FNRTFAVTAA LNAFTLGIAG VALLTSLLTL GNSRLPQVAP
LWAIGITRRR LAFIELMKTL SMAALTALLA LPLGLLVAWC LIAVVNVKAF GWRLPFEVFP
WELLKLLGVA LLASLIAAAL PILKLLRMQP AQLVKVFADE R
|
|---|
| |