| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4644 |
|---|
| Symbol | |
|---|
| ID | 3912461 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 5248015 |
|---|
| End bp | 5250729 |
|---|
| Gene Length | 2715 bp |
|---|
| Protein Length | 904 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637886548 |
|---|
| Product | diguanylate cyclase/phosphodiesterase |
|---|
| Protein accession | YP_488238 |
|---|
| Protein GI | 86751742 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.374969 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACTA CCTCGAACAG CGCCACCGGT GACACGGATG CGTCGGACCC GTCCGAGCGC
TTCGCCATCG GAAATATGCT GAACCACCGC CCCGTGGCGC TGCTGATGGG ATGCGGGCTG
CTGTTGATCT CCGCGATCGC GATCGTGACG ACGATGATCG TCGGCGATTT TCGCACCAAA
GCCCTCCAGA ACAGCGAGCG GGAGCTGGCC AATACGGCCA TGCTGCTGGC GCATCACTAC
AATCGCGAAC TGGAGGAATT CCTCGCGATC CAGACCGAGG TGGTCGCGCT GGTGAGACAG
GCCCAGCTCG ACTCCGCGGA CGCCTTCAGC GGCCAGATGG CGACGCTGGA CACCCACCAG
ATGCTGCGCG CCAAGGCGGG GACCGCGCCG GAACTCTCCG GCCTCGCGAT CTTCAACGAT
CGTGGCAATT TGATCAACAA TTCGTCGCAT TGGCCCGTGC CCGAATTGTC GATCGCCGAA
CACTCTTATT TTCAGGCCCA CAAGGCCGGC ATCGCGCCGC GAACTACGGT TGAATTGGTG
CAGAACACCC TCGCCGGCGG TTGGGCGATC GTGCTGGCGC AGCGGCTCGA CAATTCGCGC
GGCGAATTCG TCGGCGTCGT CAGCCGATCG CTGACGCCTG CGCATTTCGA ATATTTCCTG
GCGTCGGTGT CGCTCGGCGG CGATTCCGCG ATCTCGCTTC ATCACAGCAA CGGCGTGCTG
ATGGCGCGCT ATCCGCATGC CGAAGACAGC ATCGGGCTCA ATCTGCGCTC GGACGAGGTG
GCCCGACTCG GACTGTTCGA ATCGAACGTG ACCATGCCCG TGACGAGCCC GGTCGACGGT
CGGGAGCGGC TGGTGTCCTC GTACTCGCTC GCGAGCTTGC CGATTGTCGT CGTCACCGCC
ACCACCACGG ACGAGGCGCT GGCGGCGTGG CGCAAACAGA CGCGGCTGCT GATTTCGGCC
GCCACCGTCT CGGCGCTGGT GGTGTCGGTC ATTCTGCTGC TGATCATCAG GCAACTCGGC
AAGCAGCACC AAGCGACACA AGCGAGGCTG GCGCTGGACA AGCAACGCCT CAACACGGCG
ATCAACAACA TGTCTCAGGG CCTGCTGCTG TTCGACGCAG CGCAGCGCCT GGTCGTGTGC
AATCAGCGCT ACATTCAGAT GTACGGACTG TCGCCGGAGA TCGTCAAGCC GGGCTGCAGC
TTCCGCGACA TCATCGCTCA CCGGCATGCA CGGGGGTCGT TCAAGGGCGA TGTCGACGAG
TATTGCGGTC GCATCGTCCA GGCCGTGATC GTCGAAAAGA CCTCGGCGGT GCACGGCTCC
CACGACCGCT CGATCCAGAT TTCGAGCGTG CCGGTTCCGG GCGGCGGCTG GGTCGCGACG
CATGAAGACA TCACCGAGCG AATTCGCGAC AGCGAGAAGA TCGCCTATCT TGCGCACTAC
GACAGCCTGA CCGATCTGCC CAACCGCAGC CTGTTCCGGC AGCGGCTGGA GCGCGAGTTG
CACCCCGGCA GGGGCAGTGC GGCGTGCACG CTGCTCTATA TCGACATCGA CGAGTTCAAG
AGCATCAACG ACACGCTCGG CCATCCGATC GGCGACGAAC TGCTGAAGCA GGTCGCCGTC
CGGCTGCGCG AATGCGTCGG CGCCAGCGAC TTCGTCGCCC GGCTCGGGGG CGATGAATTC
GCGGTGATCG CGACCAGCGC CGCCGACAGC GATCAGGCCA CCGCGCTGGC CGAGCGCATT
CTGCAGACGA TCCGCGCGCC GTACCACTGC CTCGGCCATC ATCTGTCGAC CGACGCCTCG
ATCGGCATAG CGATCGCGCC CGGCGATGGG GAGGATATCG ACCAGCTCAT CAAGAACGCC
GATCTGGCGA TGTACAGTGC CAAGGCGGGA GGCCGGCGCA CTTTTCGATT CTTCGAGCCG
GCGATGGACG CGATTGCGCG GGCGCGTCGT GAACTCGAAT TCGATCTGCG CACCGCAATC
GCCGACGGCG GCTTCGAGAT TCACTATCAG CCGATCGTCG ACCTGCGGAG CGACGAGATC
ACCGGCTGCG AGGCGCTGCT GCGCTGGCGA CATCCGACCC GTGGTATGAT CTCACCGGCC
GAATTCATCC CGGTCGCGGA AGACACCGGT TTGATCAATG AGATCGGCGG CTGGACCCTC
GCCGCTGCGT GCGCCGAGGC GGTGCAGTGG GAGCAGAACA TCACGCTGGC CGTCAATATT
TCGCCGGTGC AGTTCCGGCA ACCGACGCTC GCGCTCCTGG TGGCCTCGGT ACTGGGGTCG
ACCGGATTGC CCGCGCAGCG ACTCGAACTC GAAGTCACCG AGGCGGTGCT GATCCACGAC
GACGATGCGG CGCTGACGAC GCTGAATCTG CTTCGCGCGC TGGGGGTGCG GATCTCGCTC
GACGATTTCG GAACCGGCTA CTCGTCGCTC AGCTACCTGC AGCGCTTCCC GTTCGACAAG
ATCAAGATCG ACCGCGCCTT CGTCGAGAAT ATCGACACCA CCGAAGGATC GACCGCGATC
ATCGAGGCCG TCGTCAACAT CGCGGCGTCG CGCAGCATGA CGACCACCGC GGAAGGCGTC
GAGACCGTAC GGCAGCGCGA TATCCTGCGC GGGCTCGGCT GCACCCAGAT GCAGGGCTGG
TTGTTCAGCC CGGCCGTGCC CGCGGCGAAA TTCAGGATGT TGCTCGCCGA GCGCCGCGCC
ACCAGGGCCG CCTGA
|
|---|
| Protein sequence | MSTTSNSATG DTDASDPSER FAIGNMLNHR PVALLMGCGL LLISAIAIVT TMIVGDFRTK
ALQNSERELA NTAMLLAHHY NRELEEFLAI QTEVVALVRQ AQLDSADAFS GQMATLDTHQ
MLRAKAGTAP ELSGLAIFND RGNLINNSSH WPVPELSIAE HSYFQAHKAG IAPRTTVELV
QNTLAGGWAI VLAQRLDNSR GEFVGVVSRS LTPAHFEYFL ASVSLGGDSA ISLHHSNGVL
MARYPHAEDS IGLNLRSDEV ARLGLFESNV TMPVTSPVDG RERLVSSYSL ASLPIVVVTA
TTTDEALAAW RKQTRLLISA ATVSALVVSV ILLLIIRQLG KQHQATQARL ALDKQRLNTA
INNMSQGLLL FDAAQRLVVC NQRYIQMYGL SPEIVKPGCS FRDIIAHRHA RGSFKGDVDE
YCGRIVQAVI VEKTSAVHGS HDRSIQISSV PVPGGGWVAT HEDITERIRD SEKIAYLAHY
DSLTDLPNRS LFRQRLEREL HPGRGSAACT LLYIDIDEFK SINDTLGHPI GDELLKQVAV
RLRECVGASD FVARLGGDEF AVIATSAADS DQATALAERI LQTIRAPYHC LGHHLSTDAS
IGIAIAPGDG EDIDQLIKNA DLAMYSAKAG GRRTFRFFEP AMDAIARARR ELEFDLRTAI
ADGGFEIHYQ PIVDLRSDEI TGCEALLRWR HPTRGMISPA EFIPVAEDTG LINEIGGWTL
AAACAEAVQW EQNITLAVNI SPVQFRQPTL ALLVASVLGS TGLPAQRLEL EVTEAVLIHD
DDAALTTLNL LRALGVRISL DDFGTGYSSL SYLQRFPFDK IKIDRAFVEN IDTTEGSTAI
IEAVVNIAAS RSMTTTAEGV ETVRQRDILR GLGCTQMQGW LFSPAVPAAK FRMLLAERRA
TRAA
|
|---|
| |