| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4638 |
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| Symbol | |
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| ID | 3912455 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 5242565 |
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| End bp | 5244391 |
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| Gene Length | 1827 bp |
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| Protein Length | 608 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637886542 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_488232 |
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| Protein GI | 86751736 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAGTG CAGCCCCCCA CGAAATGTCC GGCGACGCGA CCGAATCGGA GCCCAGCGCC
TCCGCAGGGA CTGCGTCCGG TGGGGATCTG CCGGCGTTTG CCGAAGACAT CGACTTTCAG
CTTCTGAAAG ACATCGTCCG CGGGCTCCCA TCCTTGGTCA CGGTACAAGA TCACCAGGGC
GAGTTTCTGA TCGTTAACGA TGCCGCCGCC GCCCGCTTCA ACCGGCCGGC CGGTCCAGGC
GCGACCGCCA CGCCCTGCGT CGCGCTCGAA CAGCGCCGTG CCGACGGCTT GGCTTTGCTC
GCCACCGGCC GCGGCGCGAT CTGCGAGGAA CGCGCCGGCG ACGGCGCGAC GGCGCGCACG
TTCCTGACCG CGCATCGGCC GATCGAGATC GGCGGGCGCC GGCTGCTGCT GTCGAGCTCC
CTCGACATGA CCGAACAGAA GGCGATCGAG GACGACCTGT TTCGCCGCGC CTATTTCGAC
GAGTTGACGG GGCTGCCGAA TCGCAGCGTG ATCGAACATC GCGCCGACAC CTTGCTGCGC
GCCGGGGGAA CGCCGAGCCG GTTCGCGCTG GCGTTCCTCG ACATCGATAA TTTCAAGCAC
ATCAACGATT ATTACGGCCA CGCGGTCGGC GATGCATTGT TGGTCGGGGT CGCCAAACGG
CTCGGCCTCG AACTGCGCGA GACCGACATG CTGTCGCGCA TCAGCGGCGA CGAATTCCTG
CTGTTGCTGA ATCCGATCGA GAGCCCGGCC GAGGTCGCCG ACCACATCGA TTTCCTGCTG
CAGCGACTGA AGGCGCCGTT CTACATCGAC GGGTCGGAAT TGTTCGCTTC GGCTTCGACC
GGCATCAGCC TGTATCCCGA GCACGGCCAC ACCTTCGACG CCTTGCGCCA GAACGCCGAC
ATTGCGATGT ACCGGGTCAA GATCGCGACG AAGGGCGCGG CCGCGATGTT CGACGTCGCG
ATGGAGCGCG AGGCGCTGGA ACGCATGCGC ATCGAGCAGT CACTGCGCCA GGCGATCCTC
GACAGGCGTT TCTGCTGCGC ATTCCAGCCC AAGGTCGACA TCCGGACCCG CGAGATCAAG
GGGATCGAGG CACTGGTCCG GCTGCGCGAT GACGACGGCG TCATCCAGGC GCCAGGCACT
TTCGTCGATC TGGCGGTCGA ACTCGGGCTG ATCGACGAAC TCACCCACCT GGTCCTCGCC
GAGATCATGA AATCGATCGA CCTGATCAAT GACGCATTCG GCACCCACGC CAGCATCAGC
ATCAACGTCG CGGCCAAGCA GGCCGGCAAT TCCCATTTCA TGCAGTCGTT TGCGGCAGCG
CTCGCGGCGA CCGAGTGCCC GTCGCGCTTC ATCATCGAGG TGACGGAAGA CGCTTTCGTC
ACGAAAAGTC ACTTCCAGAG CGAAATTCTG CCGATGCTGC GCGAGATCGG CGTCGGCATC
TCGATCGACG ATTTCGGCAT CGGCTACTCG TCACTGTCGG CGCTGGCGGA CATCACCGCG
GACGAAATCA AGATCGATCG ATCCTTCATC ACGGACATCC ACAAGCGGCC GCGCAGCCAG
GGCATCCTCA GGGCGATCGA GTCGCTGAGC GAGGCGCTCG GCATGACGGT GATTGCCGAA
GGCATCGAGA CCTTCGAAGA ACTCGCCTAT CTGCAGACTA TGACCCGGAT CCGCTACGCA
CAGGGCTATT ATTTCGCAAA GCCGGTGTTC CTCGAGGAGT TGAAGCCCTC GGCGCAAGGC
TTCGAGGGCG GGCGTCCACG CGAGTCAGGT CGCCAGATCG ACCAGGCGCG ACCGGTGATT
TCGCGCACCA ATGCCGGTCG CAGTTAG
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| Protein sequence | MSSAAPHEMS GDATESEPSA SAGTASGGDL PAFAEDIDFQ LLKDIVRGLP SLVTVQDHQG
EFLIVNDAAA ARFNRPAGPG ATATPCVALE QRRADGLALL ATGRGAICEE RAGDGATART
FLTAHRPIEI GGRRLLLSSS LDMTEQKAIE DDLFRRAYFD ELTGLPNRSV IEHRADTLLR
AGGTPSRFAL AFLDIDNFKH INDYYGHAVG DALLVGVAKR LGLELRETDM LSRISGDEFL
LLLNPIESPA EVADHIDFLL QRLKAPFYID GSELFASAST GISLYPEHGH TFDALRQNAD
IAMYRVKIAT KGAAAMFDVA MEREALERMR IEQSLRQAIL DRRFCCAFQP KVDIRTREIK
GIEALVRLRD DDGVIQAPGT FVDLAVELGL IDELTHLVLA EIMKSIDLIN DAFGTHASIS
INVAAKQAGN SHFMQSFAAA LAATECPSRF IIEVTEDAFV TKSHFQSEIL PMLREIGVGI
SIDDFGIGYS SLSALADITA DEIKIDRSFI TDIHKRPRSQ GILRAIESLS EALGMTVIAE
GIETFEELAY LQTMTRIRYA QGYYFAKPVF LEELKPSAQG FEGGRPRESG RQIDQARPVI
SRTNAGRS
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