| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4632 |
|---|
| Symbol | |
|---|
| ID | 3912449 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 5234061 |
|---|
| End bp | 5235833 |
|---|
| Gene Length | 1773 bp |
|---|
| Protein Length | 590 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637886536 |
|---|
| Product | ABC transporter ATPase component |
|---|
| Protein accession | YP_488226 |
|---|
| Protein GI | 86751730 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component
[COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTCC CCGCGCCCCG GCTCGTCAGC GCGGCGATTG CCGTCGCTCT CCTGATCCTT
CCGTTCAGCG GGCTGATGCC GGACTACTGG ATCACGCTGT TCAACTATAT CGGCATCTCC
AGCCTGGTGG CGATCGGTCT GGTTCTGCTC ACCGGCGTCG GCGGCATGAC CTCGTTCGGC
CAAGCGGCGT TCGTCGGCTT CGGCGCCTAC ACCACCGGCG TGCTGACCGT GTATTACGGC
ATTTCGCCCT GGCTGACGCT GCCGGCTTCG ATCCTCGTCA CCATGGTGGC GGCGCTGGCG
GTCGGCGCGA TCACGGTGCG CCTGTCCGGT CACTATCTGC CGCTCGGCAC CATCGCCTGG
GGCATCGCGT TCTTCTATCT GTTCGGCAAT CTGAGCTGGC TCGGCGCCCA TGACGGCCTG
CCGGGAATCC CGGCGCTGAA GATCGGCGAC TACGCCCTGA TCGCGCCGCG CGATTATTTC
GTCGTGGTGT GGATCGCCGT GGTGCTGGCG GTGATCGCCA CGCAGAATCT GCTGAGCGGC
CGGGTCGGCC GTGCAGTGCG GGCGCTGCGG CGCTCGACGC GCGCCGCCGA GGCGTTCGGC
GTCAACACCG CCGGCGCCAA GCTGATGGTG TTCGTCTATG CGGCGATGCT GGCGGGTCTC
GCCGGCTGGC TCTACGCGCA TTTCCAGCGC TCGGTGTCGC CGGGCCCTTT CGGCATCACC
GCCGGAACCG AATATCTGCT GATGGCCGTG CTCGGCGGCG CGGGGCGCGT CTACGGCGCG
ATCCTCGGCG CGGCTGGCAT CACCTTCCTG CGCGATCAGT TGCAGGATTG GTTGCCCCGG
CTGCTCGGCC ACACCGGCAA TTTCGAGATC ATCGCTTTCG GCGCGGTGCT GGTGCTGCTG
CTGCAGACCG CGCCCGGCGG GCTGTGGCCG ATCCTGTTCG GTCCGCCGCC GGCCCCGAAA
CTGCCGCCGC CGGACGAGGG GGACCGCCTG CCGACCCGTG CACTGCCAGC GCCCGGCACG
AAGCTGCTGC AGGCCGATCA GGCGCGCAAG AGTTTCGGCG GCCTGGTGGC GGTCAACGAT
GTGAACTTCG AGGTCGACAG CGGCCGGATC ATCGGCCTGA TCGGGCCGAA CGGCGCCGGC
AAGAGTACCA CCTTCAACTT GATCACCGGC GTGTTGCCGC TGACATCGGG GCGGATCGCG
TTCGAGGGTC ATCCGTTGCA GGCGCAGACG CCGCAGCGCG CGGCAACGCT CGGGCTCGGC
CGTACTTTCC AGCATGTCGA GATCGTCGCC GACATGAGCG TGATCGAGAA CGTCGCGCTC
GGCGCGCATT TGCGCGGCCG GGCGGGTGTG CTGCGCGCGA TCCTTCGGCT CGATCGCGCC
GAGGAGGCGC TGTTGCTCGA CAGTGCGATG CGCGCGCTGG CGCGGGTCGG CCTCGCCGAT
GTCGCGTACG AGCCGGCGGG TACGCTGGCG CTCGGGCAGC TTCGCCTCGT CGAGGTCGCG
CGTGCGCTGT GCCTCGAGCC GGTGCTGCTG CTGCTCGACG AGCCGGCCGC GGGGCTGCGT
GTCGGCGAGA AGAAGGCGCT GGCCAAGCTG CTGCGCGAGG TCCGCAGCGA AGGCATGAGT
GTGCTGCTGG TCGAGCACGA CATGGACTTC GTCATGAGTC TCGCCGATCG GCTCGTGGTG
CTCGATTTCG GCACCAAGAT CGCCGAGGGG GCGCCTGTGG CGATCCGTCA GGACCCCGCC
GTACTCGAGG CCTATCTCGG AGGCGTGTCG TGA
|
|---|
| Protein sequence | MKLPAPRLVS AAIAVALLIL PFSGLMPDYW ITLFNYIGIS SLVAIGLVLL TGVGGMTSFG
QAAFVGFGAY TTGVLTVYYG ISPWLTLPAS ILVTMVAALA VGAITVRLSG HYLPLGTIAW
GIAFFYLFGN LSWLGAHDGL PGIPALKIGD YALIAPRDYF VVVWIAVVLA VIATQNLLSG
RVGRAVRALR RSTRAAEAFG VNTAGAKLMV FVYAAMLAGL AGWLYAHFQR SVSPGPFGIT
AGTEYLLMAV LGGAGRVYGA ILGAAGITFL RDQLQDWLPR LLGHTGNFEI IAFGAVLVLL
LQTAPGGLWP ILFGPPPAPK LPPPDEGDRL PTRALPAPGT KLLQADQARK SFGGLVAVND
VNFEVDSGRI IGLIGPNGAG KSTTFNLITG VLPLTSGRIA FEGHPLQAQT PQRAATLGLG
RTFQHVEIVA DMSVIENVAL GAHLRGRAGV LRAILRLDRA EEALLLDSAM RALARVGLAD
VAYEPAGTLA LGQLRLVEVA RALCLEPVLL LLDEPAAGLR VGEKKALAKL LREVRSEGMS
VLLVEHDMDF VMSLADRLVV LDFGTKIAEG APVAIRQDPA VLEAYLGGVS
|
|---|
| |