Gene RPB_4626 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_4626 
Symbol 
ID3912443 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp5226683 
End bp5227558 
Gene Length876 bp 
Protein Length291 aa 
Translation table11 
GC content68% 
IMG OID637886530 
Productpeptidase C14, caspase catalytic subunit p20 
Protein accessionYP_488220 
Protein GI86751724 
COG category[R] General function prediction only 
COG ID[COG4249] Uncharacterized protein containing caspase domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGTTTC GTGTACCCGG CCTGTCGCGC CGCTCGATCA CCACCATCGC CGCTTTGATC 
GGCGTGGTGT CGCTGGCGAT CGGGGCGCAT GCCGCGCTGA ACAAGCGCGT CGGCGATCCG
AACGGCAGCA AGGATGTCGC CCGGATCGAC GGCTCCGGCC CGGCCGCGTC GCGTTTTGCG
CTGGTGATCG GCAACGGCCG CTATCCGGAT GCGTCGCAGC CGATGGTGCA ACCGATCAAC
GATGCGCGCG CGCTCAGCGG AGCGTTGCGT CGCGAGGGTT TCGACGTCGA CATGATCGAG
GATGCCAACC GCGACGATCT GCTCCAGGCG ATCGAGCGGA TGAAGTCCCG CGTCACCAAG
GATTCCACCG TCGTGCTGTT CTTCGGCGGC TATGGCATCC AGTCCGGCCG CGAGAGCTAC
ATGATCCCGG TCGACGCCCG GATCTGGAAC GAGGCCGATG TCCGCCGCAC CGGTATCAGC
ATCGAATCCG TGCTCGGCGC GATGCAGGAG CGCGGCGTGC AAGCCAAGCT CGCGATCGTC
GACGCCTCGC GCCGCAATCC CTATGAGCGC CGCTTCCGTG CCTATTCGCA TGGTCTTGCG
CCGATCAATG CGCCGGCCAA CGCGCTGGTG CTGTCATCGT CGACGCCCGG CAAGGTCGCC
GAGGACGGCG ACGGCCAGAA CAGCATCCTC GTCGGGGCGC TGCTCGGCTC GATCTCGTCT
CGCGTCGTCA GCGCCGAAGC CGCTTTCACC AAGGCGCGGC TCGCCGTCAC GCGCGCGACC
AACGGCGCGC AAGTGCCGTC GCTGTCGTCC TCGCTGGTCG ACGACGTCAC CCTGGCGCCG
GTCACCGCCG ATGCAACCCC GGCGAGCGGC GGCTGA
 
Protein sequence
MTFRVPGLSR RSITTIAALI GVVSLAIGAH AALNKRVGDP NGSKDVARID GSGPAASRFA 
LVIGNGRYPD ASQPMVQPIN DARALSGALR REGFDVDMIE DANRDDLLQA IERMKSRVTK
DSTVVLFFGG YGIQSGRESY MIPVDARIWN EADVRRTGIS IESVLGAMQE RGVQAKLAIV
DASRRNPYER RFRAYSHGLA PINAPANALV LSSSTPGKVA EDGDGQNSIL VGALLGSISS
RVVSAEAAFT KARLAVTRAT NGAQVPSLSS SLVDDVTLAP VTADATPASG G