Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_4619 |
Symbol | |
ID | 3912436 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | + |
Start bp | 5220130 |
End bp | 5221488 |
Gene Length | 1359 bp |
Protein Length | 452 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637886523 |
Product | MATE efflux family protein |
Protein accession | YP_488213 |
Protein GI | 86751717 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 22 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCCTCCCG CCTCGTTCGT CACCTCCCGG CAGGTGTTCG CCATCGCCGG CCCGGCGATG GTCGCCAACC TGACGACCCC GCTGCTCGGC GTGGTCGCCA CCACGGCGAT CGGACGACTC GGCGACGCCA CCATGCTCGG CGGCGTGGCG ATGACGTCGG TGATCTTCGA CTGCCTGTTC TGGCTGTTCG GCTTCCTGCG GATGAGCACG CTGGCGTTCA CCGCGCAGGC ACTCGGCGCC GGCGACACCC GCGAAGTGCC CGCTCATCTG GTCCGCGGCC TGATCGTCGC CGCGCTGATC GGGCTGGCGC TGATCGCGTT GCAAGCGCCG ATGGCAGCCG CGCTGATCGG CGCGATGGGC GGCAGCGACG GCGTCAGCGC GGCGGCGAAG GCCTACTTCT CCATCCGGAT CTGGTCCGCG CCGCTGGTGC TGGCGAATTT CGCCGTGCTC GGCTGGCTGG TCGGGCAGGC GCGCGCCAAG CTCGCGCTCG GCGTGCAGGT CGCGATCAAC CTGATCAATA TCGCGACGAC GATCGCGCTG GTGCTGTGGT TCGAGTTCGG CATCGCCGGC GCGGCGATCG CGGCGGTGAT CGCCGAGGGC TCGGGGCTGG TCGTCGGGCT TGCGGTCGCG ATCTGGCTGT TCCGCGGCGT GCCGCGGCCG TCGCGCGCCG CCTTGTTCGA CTCCGACAAG TTGAAGCGGA TGTTCGCGGT CAACCGCGAC ATCATGATTC GTACTGCCGC GATGATCGCG GTGTTCCTGT TCTTCACCGC GCAGGGCGCC CGCGACGGCG ACGTCGTGCT CGCCACCAAC TCGGTGCTCA ACAATTTCCT GATGGTCAGC GCGTTCTTTC TCGACGGCCT CGCCAACGCC GCCGAGCAGC TCTGCGGCCG AACGCTCGGC GCACGCGACC GCGCCGGCTT CGTCGCGGCG ACGCGGCTGG TGATCCTGTG GGGCTTCGGC TTCGCGCTGG TGGTGAGCGC GACCTACGCG CTGGCCGGCC CGATGCTGAT CGACGTGATG ACGTCGAACG AAGAACTGCG CCGCGCCGCG CGCGACTATC TCTGGCTGGT GACGCTGGCG CCGGTGCTCG GCGTGTTCGC CTTCGCGTTC GACGGCATCT TCATCGGCGC CACCTGGGCG CGCGAGATGC GCAATCTGAT GTTGCTGTCG CTGGTGCTGT TCTTCGCGAG CTGGCTGGCA CTGCGCCCGC TCGGCAACAC CGGGCTGTGG ATCGCGCTGC TGCTGCACTA CGTCTGGCGC GGCGGGCTGC AGGCGCTGCG CTATCCGGCG ATGCTACGCA CCTCGTTTCC GGCTGCGACG GCCGGTTCAA CTTTCCTAAA ATTGACAGCA CCGGATTAG
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Protein sequence | MPPASFVTSR QVFAIAGPAM VANLTTPLLG VVATTAIGRL GDATMLGGVA MTSVIFDCLF WLFGFLRMST LAFTAQALGA GDTREVPAHL VRGLIVAALI GLALIALQAP MAAALIGAMG GSDGVSAAAK AYFSIRIWSA PLVLANFAVL GWLVGQARAK LALGVQVAIN LINIATTIAL VLWFEFGIAG AAIAAVIAEG SGLVVGLAVA IWLFRGVPRP SRAALFDSDK LKRMFAVNRD IMIRTAAMIA VFLFFTAQGA RDGDVVLATN SVLNNFLMVS AFFLDGLANA AEQLCGRTLG ARDRAGFVAA TRLVILWGFG FALVVSATYA LAGPMLIDVM TSNEELRRAA RDYLWLVTLA PVLGVFAFAF DGIFIGATWA REMRNLMLLS LVLFFASWLA LRPLGNTGLW IALLLHYVWR GGLQALRYPA MLRTSFPAAT AGSTFLKLTA PD
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