Gene RPB_4619 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_4619 
Symbol 
ID3912436 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp5220130 
End bp5221488 
Gene Length1359 bp 
Protein Length452 aa 
Translation table11 
GC content69% 
IMG OID637886523 
ProductMATE efflux family protein 
Protein accessionYP_488213 
Protein GI86751717 
COG category[V] Defense mechanisms 
COG ID[COG0534] Na+-driven multidrug efflux pump 
TIGRFAM ID[TIGR00797] putative efflux protein, MATE family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCCTCCCG CCTCGTTCGT CACCTCCCGG CAGGTGTTCG CCATCGCCGG CCCGGCGATG 
GTCGCCAACC TGACGACCCC GCTGCTCGGC GTGGTCGCCA CCACGGCGAT CGGACGACTC
GGCGACGCCA CCATGCTCGG CGGCGTGGCG ATGACGTCGG TGATCTTCGA CTGCCTGTTC
TGGCTGTTCG GCTTCCTGCG GATGAGCACG CTGGCGTTCA CCGCGCAGGC ACTCGGCGCC
GGCGACACCC GCGAAGTGCC CGCTCATCTG GTCCGCGGCC TGATCGTCGC CGCGCTGATC
GGGCTGGCGC TGATCGCGTT GCAAGCGCCG ATGGCAGCCG CGCTGATCGG CGCGATGGGC
GGCAGCGACG GCGTCAGCGC GGCGGCGAAG GCCTACTTCT CCATCCGGAT CTGGTCCGCG
CCGCTGGTGC TGGCGAATTT CGCCGTGCTC GGCTGGCTGG TCGGGCAGGC GCGCGCCAAG
CTCGCGCTCG GCGTGCAGGT CGCGATCAAC CTGATCAATA TCGCGACGAC GATCGCGCTG
GTGCTGTGGT TCGAGTTCGG CATCGCCGGC GCGGCGATCG CGGCGGTGAT CGCCGAGGGC
TCGGGGCTGG TCGTCGGGCT TGCGGTCGCG ATCTGGCTGT TCCGCGGCGT GCCGCGGCCG
TCGCGCGCCG CCTTGTTCGA CTCCGACAAG TTGAAGCGGA TGTTCGCGGT CAACCGCGAC
ATCATGATTC GTACTGCCGC GATGATCGCG GTGTTCCTGT TCTTCACCGC GCAGGGCGCC
CGCGACGGCG ACGTCGTGCT CGCCACCAAC TCGGTGCTCA ACAATTTCCT GATGGTCAGC
GCGTTCTTTC TCGACGGCCT CGCCAACGCC GCCGAGCAGC TCTGCGGCCG AACGCTCGGC
GCACGCGACC GCGCCGGCTT CGTCGCGGCG ACGCGGCTGG TGATCCTGTG GGGCTTCGGC
TTCGCGCTGG TGGTGAGCGC GACCTACGCG CTGGCCGGCC CGATGCTGAT CGACGTGATG
ACGTCGAACG AAGAACTGCG CCGCGCCGCG CGCGACTATC TCTGGCTGGT GACGCTGGCG
CCGGTGCTCG GCGTGTTCGC CTTCGCGTTC GACGGCATCT TCATCGGCGC CACCTGGGCG
CGCGAGATGC GCAATCTGAT GTTGCTGTCG CTGGTGCTGT TCTTCGCGAG CTGGCTGGCA
CTGCGCCCGC TCGGCAACAC CGGGCTGTGG ATCGCGCTGC TGCTGCACTA CGTCTGGCGC
GGCGGGCTGC AGGCGCTGCG CTATCCGGCG ATGCTACGCA CCTCGTTTCC GGCTGCGACG
GCCGGTTCAA CTTTCCTAAA ATTGACAGCA CCGGATTAG
 
Protein sequence
MPPASFVTSR QVFAIAGPAM VANLTTPLLG VVATTAIGRL GDATMLGGVA MTSVIFDCLF 
WLFGFLRMST LAFTAQALGA GDTREVPAHL VRGLIVAALI GLALIALQAP MAAALIGAMG
GSDGVSAAAK AYFSIRIWSA PLVLANFAVL GWLVGQARAK LALGVQVAIN LINIATTIAL
VLWFEFGIAG AAIAAVIAEG SGLVVGLAVA IWLFRGVPRP SRAALFDSDK LKRMFAVNRD
IMIRTAAMIA VFLFFTAQGA RDGDVVLATN SVLNNFLMVS AFFLDGLANA AEQLCGRTLG
ARDRAGFVAA TRLVILWGFG FALVVSATYA LAGPMLIDVM TSNEELRRAA RDYLWLVTLA
PVLGVFAFAF DGIFIGATWA REMRNLMLLS LVLFFASWLA LRPLGNTGLW IALLLHYVWR
GGLQALRYPA MLRTSFPAAT AGSTFLKLTA PD