| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4617 |
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| Symbol | |
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| ID | 3912434 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 5217870 |
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| End bp | 5219738 |
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| Gene Length | 1869 bp |
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| Protein Length | 622 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637886521 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_488211 |
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| Protein GI | 86751715 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.656205 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGGT TCGCCGAATT GCTCGACCGC CTCGCCTATG AGCCCGGCCG CAACAACAAG
CTGCGGCTGA TCACCAATTA CTTCCGCGCC ACCGAAGACC CCGACCGCGG CTATGCGCTG
GCCGCGCTGA CCGGCGCATT GTCGTTTCGC CACGCCAAGC CCGGCCTGAT CCGGACTCTG
ATCGCCGAAC GCACCGATCC GGTGCTGTTC GGCCTGTCCT ACGACTATGT CGGCGACCTG
TCGGAGACGG TCGCGCTGAT GTGGCCTGCG CCGCGAGGCC GAGCCTCCTC CCCTCCCCCT
TGCGGGGAGG GAGCCTGCCC CGGACTTGAT CCGGGGTCGG GGGTGGGGGT CGACAACGGG
AGCTTTTCCT CGGCGCACCC TCACCCCACC CCTCTCCCGC AAGCGGGAGA GGGAGCGCGC
AGTCCGTCGG GTGAACACAC CTCTCCACTA TCCGACGCAG CAACGAAAGC TGGCCACAAC
AACCCGCCGC CGCCGACGCT CACCGACATC GTCACCACGC TGCACAGCCT CGGCAAGGCC
GAGCTGCCGG CGCAGCTTGC GCGCTGGCTC GACGAACTCG ACGAGACCGG ACGCTGGGCG
TTGTTGAAGC TCGTCACGGG CGGCCTGCGG ATCGGCATCT CGGCGCGCCT CGCAAAGACC
GCTGCCGCAG CGCTCGGCGA TAAGGATCCG CACGACGTCG AACTGGTCTG GCCCGGGCTC
GAGGCGCCCT ATCTCGACTT GTTCGCCTGG CTCGACGGCC GCGGCCCGCA GCCGGTCAAC
CGCGATCCGG CGCCGTTCCG CCCGGTGATG CTGGCGCATG CGGTCGAGGA CGCCGACTTC
GAGGCCATGA CCCCGGCCGA CTACATCGCC GAATGGAAAT GGGACGGCAT CCGCGTCCAG
GCGGTGAGCG GCATCGGCGA CGACGGCGAA ACCGTGGTGC GGCTGTATTC GCGCAGCGGC
GAGGACATCA CCATGAGCTT CCCGGACCTG TTGCCATCGC TGCGGCTGCC CGGCGCGATC
GACGGCGAAC TCCTGGTGCT GCGCGAAGGC CGGGTGCAGT CGTTCAACGT GCTGCAGCAA
CGGCTCAACC GCAAATCGGT GACGCCGAAG CTGATCAAGG AGTATCCGAT TCATCTGCGC
GCCTACGACC TGCTCGGCGA CGGCGACGCG GATCTGCGGA TACAGCCCTT CGTCGATCGA
CGTGCGCGGC TCGAGCGCTT CATCGCACGG CTCGACGACC CCAGAGTCGA TCTTTCGCCG
ACGGTCGCGT TCGACGATTG GGACGGCTTG CGGGCGGCGC GGCGCGATCC GGCCAGCGCC
GGCGCCGGCC TCGACGCCGA CGCGGTCGAG GGCGTGATGC TGAAGCGGCG CGACGCGCTG
TATCTGCCCG GCCGGCCGAA AGGCCAGTGG TGGAAGTGGA AGCACGACCC GCACATCATC
GACGCGGTGC TGATGTACGC CCAGCGTGGC CACGGCAAGC GCTCGTCTTA TTACTCCGAC
TACACTTTCG GGGTCTGGAC TGAAGGCGAC GACGGCGACC AGCTCGTTCC GGTCGGCAAA
GCCTATTTCG GCTTCACCGA CGAGGAGCTG CTGCAGATCG ACCGCTTCGT CCGCCGCAAC
ACCACCGAGA AATTCGGCCC GGTCCGCCAT GTCGTGCACG AGCCCGACCA GGGCCTGGTG
CTGGAAGTCG CGTTCGAGGG GCTGCAACGC TCGCCGCGGC ACAAGTCCGG CGTGGCGATG
CGGTTTCCGC GAATCAGCCG GCTGCGCTGG GACAAGCCGC CGCGCGACGC CGACCGGCTG
GCGACGCTGG AACGGATGCT GAAGGCCGAC ACCGCCGGCC CCGAAAAAGC CGCCCCGAGC
AGCCATTGA
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| Protein sequence | MNRFAELLDR LAYEPGRNNK LRLITNYFRA TEDPDRGYAL AALTGALSFR HAKPGLIRTL
IAERTDPVLF GLSYDYVGDL SETVALMWPA PRGRASSPPP CGEGACPGLD PGSGVGVDNG
SFSSAHPHPT PLPQAGEGAR SPSGEHTSPL SDAATKAGHN NPPPPTLTDI VTTLHSLGKA
ELPAQLARWL DELDETGRWA LLKLVTGGLR IGISARLAKT AAAALGDKDP HDVELVWPGL
EAPYLDLFAW LDGRGPQPVN RDPAPFRPVM LAHAVEDADF EAMTPADYIA EWKWDGIRVQ
AVSGIGDDGE TVVRLYSRSG EDITMSFPDL LPSLRLPGAI DGELLVLREG RVQSFNVLQQ
RLNRKSVTPK LIKEYPIHLR AYDLLGDGDA DLRIQPFVDR RARLERFIAR LDDPRVDLSP
TVAFDDWDGL RAARRDPASA GAGLDADAVE GVMLKRRDAL YLPGRPKGQW WKWKHDPHII
DAVLMYAQRG HGKRSSYYSD YTFGVWTEGD DGDQLVPVGK AYFGFTDEEL LQIDRFVRRN
TTEKFGPVRH VVHEPDQGLV LEVAFEGLQR SPRHKSGVAM RFPRISRLRW DKPPRDADRL
ATLERMLKAD TAGPEKAAPS SH
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