Gene RPB_4616 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_4616 
Symbol 
ID3912433 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp5216818 
End bp5217873 
Gene Length1056 bp 
Protein Length351 aa 
Translation table11 
GC content69% 
IMG OID637886520 
Productputative mRNA 3-end processing factor 
Protein accessionYP_488210 
Protein GI86751714 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1236] Predicted exonuclease of the beta-lactamase fold involved in RNA processing 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGTCGA TGCGCCCGCA AGACATCCTG ATGCCCCAAG CCGAAGGCCT GTGCTGCAAG 
CCAGGGGGCT TCCACATCGA CCCGGTGCGG CCGGTCGAAC GGGCCGTGAT CACGCATGGC
CATTCCGACC ACGCCCGGCC CGGCCACGGC GCGGTGCTGG CGACGCAGGA AACGCTCGAC
ATGATGCGGC TGCGCTACGG CGAAAATTTC GCCGGCAGCA CGCAGGCGAT CGGCTACGGC
GAAACGATCC GGCTCGGCGA GACGACAGTG ACCTTCCATC CGGCCGGCCA CGTGCTCGGT
TCGGCGCAGG TGGCGGTCGA ATGCGGCGGC CTCCGGATCG TTGCCTCCGG CGACTACAAG
GACGCGCCGG ACCCGACCTG CACGCCTTTC GAACTCGTCC GGTGCGACGT CTTCATCACC
GAGGCGACCT TCGGGCTGCC GGTATTTCGC CATCCCGACG CAACCGGGGA AGTGCGCAAG
CTGCTCGGAT CCGTCGCGCT GTTTCCGGAG CGCGCACATC TGGTCGGCGC GTACTCGCTG
GGCAAGGCGC AGCGGGTGAT CGCACTGATC CGCGATGCCG GCTATGATGC ACCGATCTAT
CTGCACGGCG CGATGGAGAA GATCACGCGT TACTATGCCC AGCGCGGTTT GCCGCTCGGC
GAGCTGCGGC CGGTCAAGGG GGTGAAGAAG GCCGAGCTCG CCGGCACCAT CACGCTGGCG
CCGCCGTCCG CGACGTCCGA TCTGTGGACG CGGCGCTTCC CCGATCCGCT CACAGCCTTC
GCCTCCGGCT GGATGCGGGT GCGCGCCCGC GCGAGGCAGC GCGGCGTCGA GCTGCCGCTG
GTGATTTCCG ACCACGCCGA CTGGGACGGC CTGACCGCGA CCATCGCCGC AACGGGCGCC
GGCGAAGTCT GGGTCACCCA CGGCCAGGAA GACGCGCTGG TGCATTGGTG CCAGCGCAAG
GGCCTCACCG CGCGCCCGCT CGATCTGGTC GGCTACGGTG ACGAAGACGA AGACGTCGGC
CTGGCGGCGG GCGAGACCGA GGCCGCCGAG GCATGA
 
Protein sequence
MSSMRPQDIL MPQAEGLCCK PGGFHIDPVR PVERAVITHG HSDHARPGHG AVLATQETLD 
MMRLRYGENF AGSTQAIGYG ETIRLGETTV TFHPAGHVLG SAQVAVECGG LRIVASGDYK
DAPDPTCTPF ELVRCDVFIT EATFGLPVFR HPDATGEVRK LLGSVALFPE RAHLVGAYSL
GKAQRVIALI RDAGYDAPIY LHGAMEKITR YYAQRGLPLG ELRPVKGVKK AELAGTITLA
PPSATSDLWT RRFPDPLTAF ASGWMRVRAR ARQRGVELPL VISDHADWDG LTATIAATGA
GEVWVTHGQE DALVHWCQRK GLTARPLDLV GYGDEDEDVG LAAGETEAAE A