| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4613 |
|---|
| Symbol | |
|---|
| ID | 3912430 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 5210782 |
|---|
| End bp | 5213595 |
|---|
| Gene Length | 2814 bp |
|---|
| Protein Length | 937 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637886517 |
|---|
| Product | DEAD/DEAH box helicase |
|---|
| Protein accession | YP_488207 |
|---|
| Protein GI | 86751711 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1201] Lhr-like helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCATCG CCGATTCCGA CGCTCCCCTC GATCTGCTGC CCGACCGCTT TCGGCACTGG
TTCGCCGCAC GCGGCTGGAC GCCGCGCGCG CACCAGCTAG CGTTGCTGCG ACAGGCGCGC
GCGCAACGCT CGGCGCTGCT GATCGCCCCG ACCGGCGCCG GCAAGACACT GGCGGGCTTT
TTGCCGACGC TGGTGGAGTT GAGCGAGGCG GCGCCTAACC TCTCCCCGAT TGCGGGGAGA
GGTCGACTAG CTGGCGTAGC CGGCAAGTCG GGTGAGGGGG CTGATGAGTT GCCCATTGCC
GGGGCAGCTG TGTGCGCCGA GGCGCCCCCT CACCCGGCGC GCCGAGCTGC GCTTGCCGCG
CCACCCTCTC CCCGCGCGCG GGGAGAGGGT TCGAGCCGCG GTCTCCATAC ACTGTATATT
TCGCCGCTGA AGGCGCTGGC GGTCGACATC GCCCGCAATC TCGAAGCGCC GATCGCGCAG
ATGAATCTGC CGATCCGGGT CGAGACCCGC ACCGGCGACA CGCCGGTGTC GCGACGCGCG
AGGCAACGCA AATATCCGCC GGACATTCTG CTGACCACGC CGGAACAGCT CGCGCTGCTG
CTGGCGTCCG ACGATGCGCC CTATCTGTTC GGTTCCCTGC AGCGCATCGT GCTCGACGAG
CTGCACGCGC TGGTGACCTC GAAGCGCGGC GATCTGCTGT CGCTGGGGCT GGCGCGGCTT
TGGCGGATCG CGCCGCAGCT TCGCGCCACC GGGCTATCGG CGACGGTCGC CGATCCCGAT
GAGCTCGCGC GCTTCCTGGT GCCGCAGCCG TTCGTTCCCT CTCCCCTTGT GGGAGAGGGT
GGCGCCGAAC GCAGTGAGGC GACGGGTGAG GGGGCGAGCG CGGGCGCCGA GCCCGCAGCC
TACCCCTCAC CCCGGCCCTC TCCCACAAGG GGAGAGGGAG AACAGGCCGA CATCGTCGTC
GCCCGCGGCG CGGCGCAGCC GATCGTCGAG ATGCTCGACA CCAAGGAGCG GCTGCCCTGG
GCCGGGCATT CGGCGCGCCA TGCGCTGGCC GAGATCTACG ACCTGATCCG GCGCAACACC
ACCACGCTGG TGTTCGTCAA CACCCGCAGC CAGGCGGAGA TGCTGTTCCA GGAACTCTGG
CGCATGAACG ACGACAATCT GGCGATCGCG CTGCATCACG GTTCGCTCGA CGTCGCGCAG
CGCCGCAAGG TCGAGGACGC GATGGCGGCG GGGCGGCTGC GTGGCGTGGT GTGCACCTCT
TCGCTCGATC TCGGCATCGA CTGGGGCGAC ATCGACCTGG TCGTCAATGT CGGCGCGCCG
AAAGGCTCGT CGCGGCTGAT GCAGCGGATC GGCCGCGCCA ATCACCGGCT CGACGAGGCG
TCGCGCGCGG TGCTGGTGCC GGCCAATCGC TTCGAAGTGC TGGAATGCGC TGCCGCAATC
GATGCGGTCG CCGAAAACGC GCAGGACACC CCGCCGCAAC GCACCGGCGC GCTCGACGTG
CTGGCGCAGC ACATCCTCGG CTGCGCCTGC GGCGAGCCGT TCGTCGCAGA TGAATTGTAC
AAGGAAGTGC GGAGTGCGGC ACCTTACGCC GATCTCAGCC GGGCTGATTT CGACGATACG
CTCGATTTCG TCGCCACCGG CGGCTACGCG CTGAAGAGCT ATGAGCGCTT CGCGCGCATC
AGGCAGGACA AGCAGGGCAA GTGGCGCGTC GCCAATCCGA AGGTGCGGCA GGCTTATCGC
CTGAATGTCG GCACCATCGT CGAGGAGGCG ATGCTGAAGG TGAAGCTGGT GCGCTCGGCG
AAGTCCAAAG GCGGCGGCCA TACCGGCGCG ATCGCGCGCG GCGGCCGGAT GCTCGGCCAG
ATCGAGGAGT ACTTCATCGA GGGCCTGACG CCGGGCGACA CCTTCGTGTT CGGCGGCGAG
GTGGTGCGCT ACGAGGCGCT GATGGAGGAT CAGGTCTACG TCTCCCGCGC GCACGACAAG
GATGCGCGGG TGCCGTCCTA TATGGGCGGC AAGTTCCCGC TCTCGACCTA TCTGGCCGAA
CGCGTCCGCG GGTTGCTCGC CGACAAGCAG GCGTGGAAGG GGCTTCCTGA TCAAGTGCGT
GACTGGCTCG CGCTGCAGAG CAAGGCGTCG CGCGTGCCGG GCCGCAGCGA GCTCGTGGTC
GAAACCTTTC CGCGCGCCGC CAAATACTAC CTGGTCTGCT ACCCGTTCGA AGGACGGCTG
GCGCATCAGA CGCTCGGCAT GCTGCTGACG CGGCGGCTGG AGCGTGCCCG CGCCCGGCCG
CTCGGCTTCG TCGCCAACGA ATATGCGCTC GCAGTGTGGG GGCTCGGCGA TACGTCTCAC
ATGATCCGGC AGGGGCGGCT CGATCTCGAC GCGCTGTTCG ATCCGGATAT GCTCGGCGAC
GATCTCGAAG CCTGGCTCGC CGAATCGGCG CTGATGAAAC GCACCTTCCG TTACGCGGCG
ATCATCTCCG GGCTGATCGC GCGGCGCTTC GCCGGCGAGG AAAAATCGCG GCGCCAGGTG
CTGTTCTCGA CTGACCTGGT CTACGACGTG CTCAACAAGC ACCAGCCCGA CCACGTGCTG
TTGCGCGCCG CGCGCGCCGA CGCCGCCACG GGGCTGCTCG ATTTACGGCG CCTCAGTGAT
ATGCTGACGC GAATCAAGGG GCGCATCGTC CACAAGGAAC TCGATCGCGT GTCGCCGCTG
GCGGTGCCGG TGATGCTGGA AATCGGCCGC GAAGCCGTGT ACGGCGAGGC TTCCGACGAA
CTGCTCGCCG ACGCGGCCGA CGAACTGGTG CGCGAGGCGA CCGAGCGTCG CTAG
|
|---|
| Protein sequence | MTIADSDAPL DLLPDRFRHW FAARGWTPRA HQLALLRQAR AQRSALLIAP TGAGKTLAGF
LPTLVELSEA APNLSPIAGR GRLAGVAGKS GEGADELPIA GAAVCAEAPP HPARRAALAA
PPSPRARGEG SSRGLHTLYI SPLKALAVDI ARNLEAPIAQ MNLPIRVETR TGDTPVSRRA
RQRKYPPDIL LTTPEQLALL LASDDAPYLF GSLQRIVLDE LHALVTSKRG DLLSLGLARL
WRIAPQLRAT GLSATVADPD ELARFLVPQP FVPSPLVGEG GAERSEATGE GASAGAEPAA
YPSPRPSPTR GEGEQADIVV ARGAAQPIVE MLDTKERLPW AGHSARHALA EIYDLIRRNT
TTLVFVNTRS QAEMLFQELW RMNDDNLAIA LHHGSLDVAQ RRKVEDAMAA GRLRGVVCTS
SLDLGIDWGD IDLVVNVGAP KGSSRLMQRI GRANHRLDEA SRAVLVPANR FEVLECAAAI
DAVAENAQDT PPQRTGALDV LAQHILGCAC GEPFVADELY KEVRSAAPYA DLSRADFDDT
LDFVATGGYA LKSYERFARI RQDKQGKWRV ANPKVRQAYR LNVGTIVEEA MLKVKLVRSA
KSKGGGHTGA IARGGRMLGQ IEEYFIEGLT PGDTFVFGGE VVRYEALMED QVYVSRAHDK
DARVPSYMGG KFPLSTYLAE RVRGLLADKQ AWKGLPDQVR DWLALQSKAS RVPGRSELVV
ETFPRAAKYY LVCYPFEGRL AHQTLGMLLT RRLERARARP LGFVANEYAL AVWGLGDTSH
MIRQGRLDLD ALFDPDMLGD DLEAWLAESA LMKRTFRYAA IISGLIARRF AGEEKSRRQV
LFSTDLVYDV LNKHQPDHVL LRAARADAAT GLLDLRRLSD MLTRIKGRIV HKELDRVSPL
AVPVMLEIGR EAVYGEASDE LLADAADELV REATERR
|
|---|
| |