| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4609 |
|---|
| Symbol | |
|---|
| ID | 3912426 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 5204722 |
|---|
| End bp | 5208039 |
|---|
| Gene Length | 3318 bp |
|---|
| Protein Length | 1105 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637886513 |
|---|
| Product | Sel1-like protein |
|---|
| Protein accession | YP_488203 |
|---|
| Protein GI | 86751707 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0790] FOG: TPR repeat, SEL1 subfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCGCG TATCGTGGAG CGTCGAGGGC ATCGAACCGT CAGTGCGCGA AAGGGCGGAG
GCCGCCGCCC GGCGCGCTGG CATGTCGCTC GCCGACTGGA TCGACGGTCA GCTCGGCGAC
AGCGCACCTC AGCCGCACCC GACGGCCGAC ACGACCCGGG AGTCGATCCG CGCCCCGCTG
GCGGAAAAGA ACGCGACCGA GGTCGCCGAA ATTCACCAAC GGCTGGATTC CATCGCCCGC
CAGATCGACC AGATTTCACG CCCCCCGGTG CGCAGCGAGC CCGGCGTGGC GCGGCAGCTC
AACGACGCGA TTTCGCGACT CGACGCAAGG CTCGCCCGGA TCACCGAACC CAAGGTCGCT
ACGGCGGCCC CCTCAGCCGT CGCGCCGACG CAGGCCGCGC CGCCCCGAGC CGCTGCCTCC
GCCCCGCAAT CGCCGACCGA ACGCGTCGAG CACGCCGCGG CGCAGGTCTA TCACGCCTCG
CCGCCGCTCG ATCCGAGTGC GCTCGATCGC GCGATCGCCG AGATCGCCGC GCGCCAGTCC
GAGCTCGACG CCCCGGTGGA GCGGATGCCG CTGCGCCAGT CGCCGCCGAT CGCGCCGGCG
ATGGCGCCGC CGCAGGCACG GCCGGGGCCC GACTTTTCCA GCCTCGAGCA ACAGCTCCTC
AAGATCACCA GCCAGATCGA CGCGCTGCAG CGCCCCGACG TGATCGAGCA ATCGATCGCG
GCGTTCCGCG CCGATCTCGC CGATATCCGC CAGACCATCA CCGAAGCATT GCCGCGCAAG
GCGATCGAAT CGCTCGAAAG CGAGATCAGA TCGCTGTCGC AGCGGCTCGA CGAGACCCGT
GCCAACGGCA GCGACGCCGG CGTGATCGCC GGGATCGAAC GCGCGCTCGG CGAAATCCGC
GATGCCTTGC GCTCGCTGAC GCCGGCCGAG CAGCTCGCCG GCTTCGACGA GGCGATCCGC
AATCTCGGCG GCAAGATCGA CATGATCGTG CGCAACAGCG ACGATCCCGG CACGCTGCAA
CAGCTCGAGA ATGCAATCGG CGCATTGCGC GGCATCGTCT CCAACGTCGC CTCCAACGAG
GCGCTGGCGC AGCTCAGCGA CAACGTTCAC ACGCTGGCCG ACAAGGTCGA TCAGCTCGCC
CGCGCCGACA GCCACAGCGA TTCCTTCGCG GCGCTGGAAA GCCGGATTTC GGCGCTGACC
GCGGCGCTGG AGAACCGCGA ACGGCCGATC GCCACCGAAT CCACCGAGCA GCTCGAAGGC
GCGGTGCGGG CGCTGTCGGA GCGGCTCGAT CAGATGCCGG TCGGCAACGA CGGCTCGTCG
GCGTTCGCTC ATCTCGAACA GCGTGTTTCC TACCTGCTCG AGCGGATGGA AGCCGCCGCC
GTCCAACGCG GCAGCGGCGA TCTCGGCCGG GTCGAGGAAG GGCTGCAGGA CATCCTCCGG
ATGCTCGAGC GGCAGCAGGA GAGCTTCCAC CGCATCGCCG ATCTCGGTCG CGCGCCGGCC
GCGCCGCCGT TCGACCCGGG CGTCGTCGAG TCGATCAAGC GCGAAATTTC CGACATCCGC
CTGAGCCAGT CGCAAACCGG ACGCCACACC CAGGATTCGC TGGAAGCGGT TCACAACACG
CTCGGCCACG TCGTCGACCG GCTGGCGATG ATCGAAGGCG ATTTGCGCAA GGCGCGGTCC
GCGCCGCAAC CCGCGGCGGC GCGCGAACCC GCCCAGCCGC AGCAGCCGGT CGTCACGCCT
CCGCCGGCGG CGCCGCAAAT CTCGCTGCCG CCGCGCCCGG AGATGCCGAA TCCCGCAGCC
GCGACCGCGT TCGCGGCCGC TCCGCGGGAG TTCGCGCCGA CGCGGCCCAC GGAACAGCCC
GAGCCGACGC CGGGACCGCG GGCGATCATG GATATTCTGG CGCCGCCCGT CAGCCGCCCC
TCGGCCCCTG AGCCGCAGAT CGCGCCGCAA AGGCTCGCCG CCGATGCCTC GCTGCCACCG
GATCATCCGC TCGAACCCGG CACCCGCCCT CCCGGCCGGG TGGCGTCGCC GTCGGAACGC
ATCGCAGCCT CGGAGAGCGC CATCAGCGAA TTCGCCGGCG CCAAGCCGGA GCCCGCCAGC
AGCTCGAATT TCATCGCGGC CGCCCGCCGC GCCGCGCAGG CCGCGGCAGC GGCCACCACC
CAATCCGGCG ACAAGCCCAA GGGCGACGGC GGCAAGTCCG GCCCGGCTCC CGGCAAGCCG
GGATCGACCA TCGGGTCCAA GATCCGCTCG CTGCTGGTCG GCGCCAGCGT CGTGGTGATC
GTGCTCGGCA CCTTCAAGAT GGCGATGAAT CTGCTCGATG ACGGCCACCC GACCCCGGCC
GCCAGCCTCA GCGAACCGGC GCCGCAGGAC TTGATGCCGC AGAGTGGGGA CGAAGAGATC
GAGCCGCCCG CGGCGAACCC CGCCACGCCG ACGCCCGCCC CGTCGATGAC ATCGCCGACC
CCGATCAATC GGCAGTCGCT GTTCGCGCCG CCGCAAACGC CTGCTGCGCC GCCCGCGCCG
TCCACCGCTC CTGCCTCCGC CGACGTCACC GGGACGATCC CGACGCCGCA GGTCAACGCC
GCCGCAAACA CCACGGTCAC GGCCACGGTC GCGATTCCGG CCGGCGAAAC CCTCCCCGAC
GCGATCGGCG GACAGGCGCT GCGCAAGGCC GCGCTGAAGG GCGACGCCGC GGCGGCCTAC
GAGGTCGGCA ACCGCTACGC CGACGGCAAG GGTATCACCG CGAATTTCGA GGAAGCGGCG
AAGTGGTACG GCCGCGCGGC GCAAGCCGGC ATCGTGCCGG CGATGTTCCG GATGGGGACC
CTCAACGAGA AGGGCCTCGG CGTGAAGAAG GACCTCGACA CGGCCCGGCG CTTCTACATT
CAGGCGGCGG ACCGCGGCAA CGCCAAGGCC ATGCACAATC TCGCGGTGCT CGACGCCGAT
GGCGGCGCCA AGGGCGCCAA CTACAAGAGC GCTGCGGAAT GGTTCCGCAA GGCGGCCGAG
CGCGGCGTCG CCGACAGCCA GTTCAACCTC GGCATCCTCT ATGCCCGCGG CATCGGCGTC
GAACAGAACC TCGCCGAATC GTTCAAATGG TTCAGCCTCG CCGCCGCCCA GGGTGACGCC
GATTCCGCGC GCAAACGCGA CGACGTCGCC AAGCGGCTCG ACCCGCAGTC GTTGTCGGCG
GCCCGGCTCG CGATCCAGAC CTTCACCGTG GAGCCGCAGC CCGACAGCGC CGTCAAGGTC
GCGGCGCCGG CCGGCGGCTG GGACGCGCAG GCGACCGCCA CAGCCAAACC AGCGACCAGC
AAGCGCGCCG CGCGTTAA
|
|---|
| Protein sequence | MNRVSWSVEG IEPSVRERAE AAARRAGMSL ADWIDGQLGD SAPQPHPTAD TTRESIRAPL
AEKNATEVAE IHQRLDSIAR QIDQISRPPV RSEPGVARQL NDAISRLDAR LARITEPKVA
TAAPSAVAPT QAAPPRAAAS APQSPTERVE HAAAQVYHAS PPLDPSALDR AIAEIAARQS
ELDAPVERMP LRQSPPIAPA MAPPQARPGP DFSSLEQQLL KITSQIDALQ RPDVIEQSIA
AFRADLADIR QTITEALPRK AIESLESEIR SLSQRLDETR ANGSDAGVIA GIERALGEIR
DALRSLTPAE QLAGFDEAIR NLGGKIDMIV RNSDDPGTLQ QLENAIGALR GIVSNVASNE
ALAQLSDNVH TLADKVDQLA RADSHSDSFA ALESRISALT AALENRERPI ATESTEQLEG
AVRALSERLD QMPVGNDGSS AFAHLEQRVS YLLERMEAAA VQRGSGDLGR VEEGLQDILR
MLERQQESFH RIADLGRAPA APPFDPGVVE SIKREISDIR LSQSQTGRHT QDSLEAVHNT
LGHVVDRLAM IEGDLRKARS APQPAAAREP AQPQQPVVTP PPAAPQISLP PRPEMPNPAA
ATAFAAAPRE FAPTRPTEQP EPTPGPRAIM DILAPPVSRP SAPEPQIAPQ RLAADASLPP
DHPLEPGTRP PGRVASPSER IAASESAISE FAGAKPEPAS SSNFIAAARR AAQAAAAATT
QSGDKPKGDG GKSGPAPGKP GSTIGSKIRS LLVGASVVVI VLGTFKMAMN LLDDGHPTPA
ASLSEPAPQD LMPQSGDEEI EPPAANPATP TPAPSMTSPT PINRQSLFAP PQTPAAPPAP
STAPASADVT GTIPTPQVNA AANTTVTATV AIPAGETLPD AIGGQALRKA ALKGDAAAAY
EVGNRYADGK GITANFEEAA KWYGRAAQAG IVPAMFRMGT LNEKGLGVKK DLDTARRFYI
QAADRGNAKA MHNLAVLDAD GGAKGANYKS AAEWFRKAAE RGVADSQFNL GILYARGIGV
EQNLAESFKW FSLAAAQGDA DSARKRDDVA KRLDPQSLSA ARLAIQTFTV EPQPDSAVKV
AAPAGGWDAQ ATATAKPATS KRAAR
|
|---|
| |