Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_4587 |
Symbol | |
ID | 3912404 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 5180924 |
End bp | 5182549 |
Gene Length | 1626 bp |
Protein Length | 541 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637886491 |
Product | cytochrome-c oxidase |
Protein accession | YP_488181 |
Protein GI | 86751685 |
COG category | [C] Energy production and conversion |
COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.0148874 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGATGG AAGCTGCAAG GGTTGCTCAT TCCGATCACG CGCACGACGA TCACGCCCAT GCGCATCCGA CCGGGTGGCG GCGCTACGTC TACTCGACCA ATCACAAGGA CATCGGCACG ATGTATCTGA TCTTCGCGAT CGTCGCGGGG ATTATCGGCG GTGCGATGTC GATCGCGATC CGGATCGAGC TGATGTACCC CGGCGTGCAG ATCTTCCACG AGAGCCACAC CTACAACGTG TTCGTTACCT CGCACGGCCT GATCATGATC TTCTTCATGG TGATGCCGGC GATGATCGGC GGGTTCGGCA ACTGGTTCGT GCCGCTGATG ATCGGCGCGC CCGACATGGC GTTCCCGCGG ATGAACAACA TCTCGTTCTG GCTGCTGCCG GCGGCGTTCG CGCTGTTGCT GATCTCGACC TTCGTCGAGG GCGAGCCGTC GTCGAACGGC GTCGGCGCGG GCTGGACGAT GTACGCGCCG CTGTCGACCT CGGGGCATCC CGGCCCCGCC GTCGATTTCG CCATCCTGGC GCTGCATCTG GCCGGCGCCT CCTCGATCCT CGGCGCCATC AACTTCATCA CCACGATCTT CAACATGCGC GCGCCCGGCA TGACGCTGCA CAAGATGCCG CTGTTCGTGT GGTCGATCCT GGTCACCGTG TTCCTGCTGC TGCTGTCGCT GCCGGTGCTC GCCGGCGCCA TCACCATGCT GCTGACCGAC CGCAATTTCG GCACCACCTT CTTCTCCGCC GAAGGCGGCG GCGATCCGTT GCTGTTCCAG CATCTGTTCT GGTTCTTCGG TCATCCCGAA GTCTACATCC TGATCCTGCC GGCGTTCGGC ATGGTCAGCC AGATCGTCTC GACCTTCTCG AAGAAGCCGG TGTTCGGCTA TCTCGGCATG GCCTATGCGA TGGTGGCGAT CGGCGTGATC GGCTTCGTGG TGTGGGCGCA CCACATGTAC ACGGTCGGGA TGTCGAGCAC GACGCAGGCC TATTTCGTCG CCGCCACGAT GGTGATCGCG GTGCCGACCG GGGTGAAGAT CTTCTCCTGG ATCGCCACGA TGTGGGGCGG CTCGATCGAG TTCAAGACGC CGATGTTGTG GGCCGTCGGC TTCATCTTCC TGTTCACCGT CGGCGGCGTC ACCGGCGTGG TGCTGGCCAA TGCCGGCGTC GACCGCGTGC TGCAGGACAC CTATTACGTC GTCGCGCACT TCCACTACGT GCTATCGCTC GGCGCCGTGT TCGGGATCTT CGCCGGCTGG TACTACTGGT TCCCGAAGAT GTTCGGCTAC ATGTACTCGG AGACCATCGG CAAGCTGCAT TTCTGGGTGA CGTTCATCGG CGTCAACATG GTGTTCTTCC CGCAGCACTT CCTCGGCCTG TCCGGCATGC CGCGGCGCTA CGTCGACTAT CCGGACGCGT TCGCCGGCTG GAACCTGGTG TCGTCGATCG GCTCCTACAT CTCCGGCTTC GCCGTGCTGA TCTTCCTGTT CGGCATGGCG CTGGCCTTCA TCCGCAAGGA GAAGGCCGCC GACAATCCGT GGGGCGCCGG CGCCACCACG CTGGAATGGA CGCTGTCGTC GCCGCCGCCG TTCCATCAGT TCGAAGTGCT GCCGCAGGTC CGCTGA
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Protein sequence | MTMEAARVAH SDHAHDDHAH AHPTGWRRYV YSTNHKDIGT MYLIFAIVAG IIGGAMSIAI RIELMYPGVQ IFHESHTYNV FVTSHGLIMI FFMVMPAMIG GFGNWFVPLM IGAPDMAFPR MNNISFWLLP AAFALLLIST FVEGEPSSNG VGAGWTMYAP LSTSGHPGPA VDFAILALHL AGASSILGAI NFITTIFNMR APGMTLHKMP LFVWSILVTV FLLLLSLPVL AGAITMLLTD RNFGTTFFSA EGGGDPLLFQ HLFWFFGHPE VYILILPAFG MVSQIVSTFS KKPVFGYLGM AYAMVAIGVI GFVVWAHHMY TVGMSSTTQA YFVAATMVIA VPTGVKIFSW IATMWGGSIE FKTPMLWAVG FIFLFTVGGV TGVVLANAGV DRVLQDTYYV VAHFHYVLSL GAVFGIFAGW YYWFPKMFGY MYSETIGKLH FWVTFIGVNM VFFPQHFLGL SGMPRRYVDY PDAFAGWNLV SSIGSYISGF AVLIFLFGMA LAFIRKEKAA DNPWGAGATT LEWTLSSPPP FHQFEVLPQV R
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