| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4564 |
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| Symbol | |
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| ID | 3912381 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 5160324 |
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| End bp | 5163833 |
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| Gene Length | 3510 bp |
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| Protein Length | 1169 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637886468 |
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| Product | periplasmic sensor hybrid histidine kinase |
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| Protein accession | YP_488158 |
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| Protein GI | 86751662 |
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| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0591] Na+/proline symporter
[COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.519353 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCACG ATTGGGGCGT GATCGCAGCC GCGCTCGCCT ATATCGGCTT CCTCTTCTAT
GTCGCGAGTT TCGGCGACCG GCTGTCGCAA GGCCAGCGCG AGCGCGCCGG TGGCCTGATC
TATCCGCTGT CGCTGGCGAT CTACTGCACC TCCTGGACGT TCTTCGGCTC GGTCGGCTTC
GCCAGCCGCA CCAGCATCGA CTTCCTCGCG ATCTATGTCG GGCCGATCCT GCTGATCGGC
GTGTTCACGC CGCTGCTGCG TCGCGTCATC CGGCTGGCGA AATCGCAGAA CATCACCTCG
ATCGCCGACT TCATCGCCGC CCGCTACGGC AAGAGCCAGA AGGTCGCCGC CACGGTGGCG
ATCATCGCCA TCATCGGCTC GGTGCCCTAC ATCGCGCTGC AGCTCAAGGC GGTGGCATCG
TCGCTGCAGA CCATCCTCGG CGACGATCAC AACATCGCCG AAATTCCGAT CGTCGGCGAC
ATGGCGCTGA TCGTGGCGAT CCTGATGGCG CTGTTCGCGG TGCTGTTCGG CGCCCGCCAG
GCCAGCGCCA CCGAGCATCA GCACGGCCTG ATGCTGGCGA TCGCCACCGA ATCGATCGTC
AAGCTGGTGG CGTTCATCGC TGCGGGGGTC TTCGTCACCT TCTGGATGTT CAGCCCGGCC
GATCTGATCG AGCGGGCGAT GAAGATGCCG GAAGCGGTGC GGGTGCTCGA ATCGACGCCG
TCGGCCACCA CCTTTCTGAC CATGACGGTG CTGTCGTTCT GCGCCTTTCT GATGCTGCCG
CGGCAGTTCT ATGTCGGCGT GGTGGAGAAC ACCAACGACG CCGAGGTCAG CCGCGCCCGC
TGGATGTTCC CGCTGTATCT GATCGCGATC AATCTGTTCG TGATCCCGAT CGCGCTGGCG
GGGCTGGTGA AATTTCCGTT CGGCGCGGTC GACAGCGACA TGTTCGTGCT GGCGCTGCCG
ATCGAGGCCA ATGCGCCGCT GCTCAGCTTC ATGGTGTTCA TCGGCGGCCT GTCGGCGGCG
ACCGCGATGG TGATCGTCGA ATGCGTGGCG CTGGCGGTGA TGGTGTCGAA CGATCTGGTG
ATGCCGCTGG TGCTGAAGCG CCACGGCGCG CCGCGCAACG ACCAGCGCAG CTTCGGCGGC
TTTCTGCTGA CGGTGCGGCG GGTCGCCATC TTCGCGATCC TGATCCTGGC CTATCTGTAT
TACCGCGCGC TCGGCAACAC CCAGCTCGCC GCCATCGGCC TGTTGTCCTT CGCGGCGATC
GCGCAGTTCG CGCCGGCGTT CTTCGGCGGG CTGATCTGGC GCCGCGCCAC CGCGCGTGGC
GCGATCGGCG GCATGATGAT CGGCTTCGCG GCCTGGGCCT ATACGCTGTT CATCCCGAGC
TTCATGGAGG GCAGCACCGC GGGACTCGTG CTGTTGCAGC AAGGCCCGTG GGGAATCGAA
GCGCTGCGGC CCCGGGCGCT GTTCGGCGCC GAATTGCCGC CGCTGGTGCA CGGCGTGGTG
TGGAGCCTGT CGCTCAATCT GTTCGCCTAT ATCGCGCTGT CGCTGCTGAG CCGGCCGTCG
TCGATCGAGC GGCTGCAGGC CGAAGTGTTC GTGCCGGACA CGCTGACGCC GATGACGCCG
GCGTTCCGGC GCTGGCGCAC CACCGTGACG GTGCAGGATA TTCTCGGCGC GGTCGGGCAG
TATCTCGGGC CGGAGCGGGC GCGGGACTCG TTTCGGTCGT TCGCGATCAG CCGCCGGTTG
ACGCTCGACC CGGCGGCGCC GGCGGATTTC GAACTGTTGA AGCACGCCGA GCACTTGATC
GCGTCCTCGA TCGGGGCGGC GTCGTCGCGG CTGGTGCTGT CGTTGCTGCT GCGCAAGCGC
ACCGTGTCGG CGGAAGCCGC GCTGAAGCTG CTCGACGACT CCCACGCGGC GCTGCATTTC
AACCGCGAGA TCCTGCAGAC CGCGCTCAAC CACGTCCGCC AGGGCATCGC GGTGTTCAAC
CCGGAGCTGC AGCTGATCTG CTCCAACCGG CAGTTCGGCG AGATCCTCGG GCTGCCGCCG
CACATCATCC AGATCGGCAT CCCGCTGATC GAGATCCTCG AATTCCTGTC GAGCGCCAGC
GCCGGATCGG CCGATACAGA AGCGCAGACC CAGATGCGGC TCGCGTCCTA TACCACCGAG
GGCGAGCCGT TCCTGGAACG GCTGCACGAC CGCCATCTGG TGATCGAGGT CCGCGCCAAC
CGCATGCCGG ACGGCGGGCT GGTGATCACT TTCTCCGACG TCACCCCGAG CTTCGAGGCG
GCCGAGGCGC TGGAGCGCGC CAATGCCACG CTGGAGCGGC GGGTGCGCGA ACGCACCGAG
GAACTGACCC GGCTGAACTC GCAGCTCGCG CTGGCCAAGA GCACCGCCGA GGAAGCCAAC
ATCTCCAAGA CCCGGTTTCT GGCGGCGGCG AGCCACGACA TCCTGCAGCC GCTCAACGCG
GCGCGGCTGT ACGCCACCAG CCTGGTCGAG CGTCAGAACG GCGGCGAGGA TTCGCGCCTG
GTCGAGAACA TCGACGAATC GCTCGAGGCG ATCGAGGAGA TCATCGGCGC GCTGCTCGAC
ATCTCGCGGC TCGACGCCGG CGCGATGACG CCGTCGCTGA CCAATTTCGT CATCGGCGAT
CTGATGCGCT CGCTGGAGAT CGAATTCGCC CCGACCGCGC GCGCCAAAGG TCTGCAACTC
ATCTTCGTGC CGTGTTCGCT TCCGGTGCGG TCGGACCGTC TGATGCTACG CCGGCTGATG
CAGAACCTGA TCTCCAACGC GATCAAATAC ACGCCGCAGG GCCGCGTGCT GGTCGGCTGC
CGCCGCCAGG GCGAGTCCTT GAAGATCGGC ATCTACGACA CCGGCGTCGG CGTGCCGATC
CTCAAGCGCG GCGAGATCTT CAAGGAATTC CACCGGCTCG AACAGGGCGC CCGGATCGCC
CGCGGCCTCG GCCTCGGGCT GTCGATCGTG GAGCGGCTGG CGCGGGTGCT GAACCACGGC
ATCACGCTCG ACGCCAATCG CGGCGGCGGC TCGTGTTTCG CCGTCACCGT TCCGGTCGCC
GCCGTCGTCA ACCACACCAC CGCGGTGACC AGCGCGACGC CGCTGTCGCG CGCCTCGATG
GCCGGCAGCC TGGTGGTGTG CATCGAGAAC GATCCGGCGA TCCTCGACGG CATGAAGACG
CTGCTGACGA CCTGGGACGC CAGCGTGATC GCGGTGGCCG ATCCGGACGC GGCGATCAAG
GCGATCGAGT CGGCCGACCG GCGCATCACC GGGCTGCTGG TCGATTATCA CCTCGATCGC
GGCAACGGCA TCGCGGCGAT CCGCGACATC CGCGCCCGCT TCGGCGTCGC CATCCCGGCG
ATCCTGATCA CCGCCGACCG CAGCCCCGGC GTCCGCGCCG CCGCCCGGCA GGAGGAGATC
GCGGTGCTGA ACAAGCCAGT GAAAGCCGCC TCGCTCCGCG CGCTGCTCAA CCAGTGGCAC
GCCCAGCAGA GCATCGCGGC GGCGGAGTAG
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| Protein sequence | MLHDWGVIAA ALAYIGFLFY VASFGDRLSQ GQRERAGGLI YPLSLAIYCT SWTFFGSVGF
ASRTSIDFLA IYVGPILLIG VFTPLLRRVI RLAKSQNITS IADFIAARYG KSQKVAATVA
IIAIIGSVPY IALQLKAVAS SLQTILGDDH NIAEIPIVGD MALIVAILMA LFAVLFGARQ
ASATEHQHGL MLAIATESIV KLVAFIAAGV FVTFWMFSPA DLIERAMKMP EAVRVLESTP
SATTFLTMTV LSFCAFLMLP RQFYVGVVEN TNDAEVSRAR WMFPLYLIAI NLFVIPIALA
GLVKFPFGAV DSDMFVLALP IEANAPLLSF MVFIGGLSAA TAMVIVECVA LAVMVSNDLV
MPLVLKRHGA PRNDQRSFGG FLLTVRRVAI FAILILAYLY YRALGNTQLA AIGLLSFAAI
AQFAPAFFGG LIWRRATARG AIGGMMIGFA AWAYTLFIPS FMEGSTAGLV LLQQGPWGIE
ALRPRALFGA ELPPLVHGVV WSLSLNLFAY IALSLLSRPS SIERLQAEVF VPDTLTPMTP
AFRRWRTTVT VQDILGAVGQ YLGPERARDS FRSFAISRRL TLDPAAPADF ELLKHAEHLI
ASSIGAASSR LVLSLLLRKR TVSAEAALKL LDDSHAALHF NREILQTALN HVRQGIAVFN
PELQLICSNR QFGEILGLPP HIIQIGIPLI EILEFLSSAS AGSADTEAQT QMRLASYTTE
GEPFLERLHD RHLVIEVRAN RMPDGGLVIT FSDVTPSFEA AEALERANAT LERRVRERTE
ELTRLNSQLA LAKSTAEEAN ISKTRFLAAA SHDILQPLNA ARLYATSLVE RQNGGEDSRL
VENIDESLEA IEEIIGALLD ISRLDAGAMT PSLTNFVIGD LMRSLEIEFA PTARAKGLQL
IFVPCSLPVR SDRLMLRRLM QNLISNAIKY TPQGRVLVGC RRQGESLKIG IYDTGVGVPI
LKRGEIFKEF HRLEQGARIA RGLGLGLSIV ERLARVLNHG ITLDANRGGG SCFAVTVPVA
AVVNHTTAVT SATPLSRASM AGSLVVCIEN DPAILDGMKT LLTTWDASVI AVADPDAAIK
AIESADRRIT GLLVDYHLDR GNGIAAIRDI RARFGVAIPA ILITADRSPG VRAAARQEEI
AVLNKPVKAA SLRALLNQWH AQQSIAAAE
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