Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_4495 |
Symbol | |
ID | 3912311 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | + |
Start bp | 5082352 |
End bp | 5085228 |
Gene Length | 2877 bp |
Protein Length | 958 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637886398 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_488089 |
Protein GI | 86751593 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.175497 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGCGTCTGA CCCGATGCCT TGCGCTTCTG GCGCTCGGCT TGATGATGAT TGCGGCCGCC CCGCAGGCAC ATGCGCTCGA CGCCGTCAGC GTCCGCAGCG ACGCGCCGGC GATCGACCTC ACTGGCGTGC TCGACCACCA GCGCAGCGAC ACCGACCGCA TCCAGATCTC CACCGCGCCG GGCAGCGACG GCATCGTCCG CCGCGTCGAG GTCCGCGCCC GCGAGGGCGG CCAGAACTGG GTGGTGTTCG CGCTCGCCAA CAACACCGAC GATCAGCTCG ACCGCCTGAT CGTCGCGCCG CATTACCGGA TGGTGTCGTC CGGCCTGTTC TGGCCCGACC TCGGCCTGTC GCGGATCGCG ACCATCACAC CCTCGACCGG CGACCGCCCC GAACGTCAGG ACTCCGGCAC CGCCGACATC TTCCGCGTCA CGCTCGACCC CGGTTCGGTG ATCACCTTCG TCGCCGAATT GCGCACCGAC AAGCTGCCGC AGCTGTATCT ATGGGAACCC GAGGCCTACA AGGACAAGGT CAACTCGTTC ACGCTGTACC ATGGCATCGT GATCGGCATC TCCGGCCTGC TGGCGCTGGT GCTGACGATC CTGTTCGTGG TCAAGGGCAG CATCATGTTC CCCGCCGCCG CGGCGCTGGC GTGGGCGGTG CTGGTCTATA TCGGCATCGA CTTCGGGTTC TGGAGCAAGG TGTTCGACAT GTCGGCGGGC GCCGAGCGGG TGTGGCGCGC CTCCGGCGAA GCGATCCTCG CCGCGACGCT GCTGGTGTTC CTGTTCGCCT ATCTCAATCT CAGTCGCTGG CACGTGCGCT ACTCGCACAT CACGCTGGGC TGGCTCGCCT TCCTGGGCTC GCTGGTGGGG CTGGCGCTGT TCGACCCCGC GGTCGCGTCC GGCATCGCGC GGATGTCGCT GGTGCTGATC GCCTTCGCCG GTTTCGGGCT GGTGGTGTAT CTGTCGACCC ACGGCTTCGA TCGCGCGGTG CTGCTGATCC CGACCTGGTT CCTGCTGGTG ATCTGGGTGA TCGCGTCCGG CATGGCAGTC GCGGGCTCGG TCACCAACGA CATCGTCGGC CCGGCGCTGC TCGGCGGCCT GGTGCTGATC GTGATGCTGA TCGGCTTCAC CGTGATGCAG CACGCCTTCG CTGGCTCGGG CGCCACCGGC GGCGTGGTGT CGGACGTCGA ACGCCGGGCG CTGGCGCTGA TCGGCTCCGG CGACCTCATC TGGGACTGGG ACGTCTCCGC CGACAAGGTG TTCACCAGTC CGGAGACCGA GGCGCTGCTG GGCCTGAAGC GCGGCGCGCT GGAAGGCTCG GCGGCGAGCT GGCTGGAAGT GCTGCATCCG CTCGATCAGG ACCGTTTTCG CGCCGCGCTC GACTCGGTGC TCGACCAGCG CCGCGGCCGG CTGACCCAGC ATTTCCGGCT GCGCACGCCG GACGGGCACT TCATGTGGTT CGCCCTGAAG GCGCGGCCGG TGGTCGGCGC CGACGGCGAA GTCACCCGCG TGGTCGGCAC GCTGACCGAC GTCACCGAGG CCAAGAACGC CGAAGAACGG ATGCTGCACG ATTCGGTGCA CGACAATCTC ACCGGCCTGC CGAACCGCAA GCTGTTCATG GACCGGCTCG GCGCGGTGGC GAATTTCGCC AAGACGATGC CGACGCTGCG GCCGACCCTG ATGGTGATCG ACCTCGACCG CTTCAAGCAG GTCAATGATT CCGTCGGCAT CGCGGTCGGC GATTCCATCT TGCTGACTCT GGCGCGCCGT CTCACCCGCA TCCTCAAGCC GCAGGACACG CTGGCGCGGA TCGCCGGCGA CCAGTTCGGC CTGATCCTGC TGTCGGAGCA GGACCCCGCC AAGATCACCG CCTTCGCCGA GACCATCCGC AAGACCATCA AGGCGCCGAT CGCTTTCAAC GACCGCGAGA TCTTCCTCAC CGCCTCGATC GGGCTGGCCT TGAGCGACCC GCAGACCCAG CTCTCGGACG AGATCATCAA GGACGCCGAG CTGGCGATGT ATCACTCCAA GCGGATCGGC GGCGACCGCA TCGACGTCTA CAAGCCGGCG ATGCGCGCAC GCAAATCCGA TCGCCTGACG CTGGAATCCG AACTCCGCCG CGCCATCGAG CGGCAGGAGA TCACCATCCT GTATCAGCCG ATCGTGCGGC TGGAGGATCG CTCGGTCGCC GGCTTCGAGG CGCTGGCGCG CTGGGACCAT CCCAAGCTCG GGCGGATGGC GCCCTCCGAA TTCATCGCGA TCGCCGAGGA GATCGGACTG ATCGTCGAGC TCGGGCTGTT CGTGATGGAC CAGACCGCCA AGCAGCTCGC GATCTGGCAG CGCGCGATGC GCGCGCGCGA GCCGATCTTC GCCAGCGTCA ACGTGTCGTC GCGGCAATTG CTGCGCCACG ACCTGCTCCA CGACATCCGC ACCGTGCTGT CGCGCTCCTC GATCGCCCGC GGCACGCTGA AGCTCGAACT CACCGAATCG CTGGTGATGG AAAATCCGGA GCACGCCGCC CAGATGCTGA CGCGGATTCG CGAACTCGGC ACCGGCCTGT CGCTCGACGA TTTCGGCACC GGCCATTCGT CGCTGGCCTA TCTGCAGCGC TTCCCGTTCG ACACCATCAA GATCGATCAG TCGTTCGTCC GCACCACCAG CCGCGGCACC CGCCCGGTGA TCCTGAAATC GATCATCGCG CTGGCGCACG ATCTCGGCAT GGACGTGGTG GCGGAAGGCG CCGAGACGGA TTCGGACGCG GTCGAATTGT ATCAGCTCGG CTGCGAATAC GCCCAGGGCT TCGCCTTCGG CGAGCCGATG GACGCCGACG CCGCGATGCG GCTGCTGACG GAAGAACGTC TGGAAGCCGC GAGCTGA
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Protein sequence | MRLTRCLALL ALGLMMIAAA PQAHALDAVS VRSDAPAIDL TGVLDHQRSD TDRIQISTAP GSDGIVRRVE VRAREGGQNW VVFALANNTD DQLDRLIVAP HYRMVSSGLF WPDLGLSRIA TITPSTGDRP ERQDSGTADI FRVTLDPGSV ITFVAELRTD KLPQLYLWEP EAYKDKVNSF TLYHGIVIGI SGLLALVLTI LFVVKGSIMF PAAAALAWAV LVYIGIDFGF WSKVFDMSAG AERVWRASGE AILAATLLVF LFAYLNLSRW HVRYSHITLG WLAFLGSLVG LALFDPAVAS GIARMSLVLI AFAGFGLVVY LSTHGFDRAV LLIPTWFLLV IWVIASGMAV AGSVTNDIVG PALLGGLVLI VMLIGFTVMQ HAFAGSGATG GVVSDVERRA LALIGSGDLI WDWDVSADKV FTSPETEALL GLKRGALEGS AASWLEVLHP LDQDRFRAAL DSVLDQRRGR LTQHFRLRTP DGHFMWFALK ARPVVGADGE VTRVVGTLTD VTEAKNAEER MLHDSVHDNL TGLPNRKLFM DRLGAVANFA KTMPTLRPTL MVIDLDRFKQ VNDSVGIAVG DSILLTLARR LTRILKPQDT LARIAGDQFG LILLSEQDPA KITAFAETIR KTIKAPIAFN DREIFLTASI GLALSDPQTQ LSDEIIKDAE LAMYHSKRIG GDRIDVYKPA MRARKSDRLT LESELRRAIE RQEITILYQP IVRLEDRSVA GFEALARWDH PKLGRMAPSE FIAIAEEIGL IVELGLFVMD QTAKQLAIWQ RAMRAREPIF ASVNVSSRQL LRHDLLHDIR TVLSRSSIAR GTLKLELTES LVMENPEHAA QMLTRIRELG TGLSLDDFGT GHSSLAYLQR FPFDTIKIDQ SFVRTTSRGT RPVILKSIIA LAHDLGMDVV AEGAETDSDA VELYQLGCEY AQGFAFGEPM DADAAMRLLT EERLEAAS
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