| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4495 |
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| Symbol | |
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| ID | 3912311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 5082352 |
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| End bp | 5085228 |
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| Gene Length | 2877 bp |
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| Protein Length | 958 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637886398 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_488089 |
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| Protein GI | 86751593 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.175497 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGTCTGA CCCGATGCCT TGCGCTTCTG GCGCTCGGCT TGATGATGAT TGCGGCCGCC
CCGCAGGCAC ATGCGCTCGA CGCCGTCAGC GTCCGCAGCG ACGCGCCGGC GATCGACCTC
ACTGGCGTGC TCGACCACCA GCGCAGCGAC ACCGACCGCA TCCAGATCTC CACCGCGCCG
GGCAGCGACG GCATCGTCCG CCGCGTCGAG GTCCGCGCCC GCGAGGGCGG CCAGAACTGG
GTGGTGTTCG CGCTCGCCAA CAACACCGAC GATCAGCTCG ACCGCCTGAT CGTCGCGCCG
CATTACCGGA TGGTGTCGTC CGGCCTGTTC TGGCCCGACC TCGGCCTGTC GCGGATCGCG
ACCATCACAC CCTCGACCGG CGACCGCCCC GAACGTCAGG ACTCCGGCAC CGCCGACATC
TTCCGCGTCA CGCTCGACCC CGGTTCGGTG ATCACCTTCG TCGCCGAATT GCGCACCGAC
AAGCTGCCGC AGCTGTATCT ATGGGAACCC GAGGCCTACA AGGACAAGGT CAACTCGTTC
ACGCTGTACC ATGGCATCGT GATCGGCATC TCCGGCCTGC TGGCGCTGGT GCTGACGATC
CTGTTCGTGG TCAAGGGCAG CATCATGTTC CCCGCCGCCG CGGCGCTGGC GTGGGCGGTG
CTGGTCTATA TCGGCATCGA CTTCGGGTTC TGGAGCAAGG TGTTCGACAT GTCGGCGGGC
GCCGAGCGGG TGTGGCGCGC CTCCGGCGAA GCGATCCTCG CCGCGACGCT GCTGGTGTTC
CTGTTCGCCT ATCTCAATCT CAGTCGCTGG CACGTGCGCT ACTCGCACAT CACGCTGGGC
TGGCTCGCCT TCCTGGGCTC GCTGGTGGGG CTGGCGCTGT TCGACCCCGC GGTCGCGTCC
GGCATCGCGC GGATGTCGCT GGTGCTGATC GCCTTCGCCG GTTTCGGGCT GGTGGTGTAT
CTGTCGACCC ACGGCTTCGA TCGCGCGGTG CTGCTGATCC CGACCTGGTT CCTGCTGGTG
ATCTGGGTGA TCGCGTCCGG CATGGCAGTC GCGGGCTCGG TCACCAACGA CATCGTCGGC
CCGGCGCTGC TCGGCGGCCT GGTGCTGATC GTGATGCTGA TCGGCTTCAC CGTGATGCAG
CACGCCTTCG CTGGCTCGGG CGCCACCGGC GGCGTGGTGT CGGACGTCGA ACGCCGGGCG
CTGGCGCTGA TCGGCTCCGG CGACCTCATC TGGGACTGGG ACGTCTCCGC CGACAAGGTG
TTCACCAGTC CGGAGACCGA GGCGCTGCTG GGCCTGAAGC GCGGCGCGCT GGAAGGCTCG
GCGGCGAGCT GGCTGGAAGT GCTGCATCCG CTCGATCAGG ACCGTTTTCG CGCCGCGCTC
GACTCGGTGC TCGACCAGCG CCGCGGCCGG CTGACCCAGC ATTTCCGGCT GCGCACGCCG
GACGGGCACT TCATGTGGTT CGCCCTGAAG GCGCGGCCGG TGGTCGGCGC CGACGGCGAA
GTCACCCGCG TGGTCGGCAC GCTGACCGAC GTCACCGAGG CCAAGAACGC CGAAGAACGG
ATGCTGCACG ATTCGGTGCA CGACAATCTC ACCGGCCTGC CGAACCGCAA GCTGTTCATG
GACCGGCTCG GCGCGGTGGC GAATTTCGCC AAGACGATGC CGACGCTGCG GCCGACCCTG
ATGGTGATCG ACCTCGACCG CTTCAAGCAG GTCAATGATT CCGTCGGCAT CGCGGTCGGC
GATTCCATCT TGCTGACTCT GGCGCGCCGT CTCACCCGCA TCCTCAAGCC GCAGGACACG
CTGGCGCGGA TCGCCGGCGA CCAGTTCGGC CTGATCCTGC TGTCGGAGCA GGACCCCGCC
AAGATCACCG CCTTCGCCGA GACCATCCGC AAGACCATCA AGGCGCCGAT CGCTTTCAAC
GACCGCGAGA TCTTCCTCAC CGCCTCGATC GGGCTGGCCT TGAGCGACCC GCAGACCCAG
CTCTCGGACG AGATCATCAA GGACGCCGAG CTGGCGATGT ATCACTCCAA GCGGATCGGC
GGCGACCGCA TCGACGTCTA CAAGCCGGCG ATGCGCGCAC GCAAATCCGA TCGCCTGACG
CTGGAATCCG AACTCCGCCG CGCCATCGAG CGGCAGGAGA TCACCATCCT GTATCAGCCG
ATCGTGCGGC TGGAGGATCG CTCGGTCGCC GGCTTCGAGG CGCTGGCGCG CTGGGACCAT
CCCAAGCTCG GGCGGATGGC GCCCTCCGAA TTCATCGCGA TCGCCGAGGA GATCGGACTG
ATCGTCGAGC TCGGGCTGTT CGTGATGGAC CAGACCGCCA AGCAGCTCGC GATCTGGCAG
CGCGCGATGC GCGCGCGCGA GCCGATCTTC GCCAGCGTCA ACGTGTCGTC GCGGCAATTG
CTGCGCCACG ACCTGCTCCA CGACATCCGC ACCGTGCTGT CGCGCTCCTC GATCGCCCGC
GGCACGCTGA AGCTCGAACT CACCGAATCG CTGGTGATGG AAAATCCGGA GCACGCCGCC
CAGATGCTGA CGCGGATTCG CGAACTCGGC ACCGGCCTGT CGCTCGACGA TTTCGGCACC
GGCCATTCGT CGCTGGCCTA TCTGCAGCGC TTCCCGTTCG ACACCATCAA GATCGATCAG
TCGTTCGTCC GCACCACCAG CCGCGGCACC CGCCCGGTGA TCCTGAAATC GATCATCGCG
CTGGCGCACG ATCTCGGCAT GGACGTGGTG GCGGAAGGCG CCGAGACGGA TTCGGACGCG
GTCGAATTGT ATCAGCTCGG CTGCGAATAC GCCCAGGGCT TCGCCTTCGG CGAGCCGATG
GACGCCGACG CCGCGATGCG GCTGCTGACG GAAGAACGTC TGGAAGCCGC GAGCTGA
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| Protein sequence | MRLTRCLALL ALGLMMIAAA PQAHALDAVS VRSDAPAIDL TGVLDHQRSD TDRIQISTAP
GSDGIVRRVE VRAREGGQNW VVFALANNTD DQLDRLIVAP HYRMVSSGLF WPDLGLSRIA
TITPSTGDRP ERQDSGTADI FRVTLDPGSV ITFVAELRTD KLPQLYLWEP EAYKDKVNSF
TLYHGIVIGI SGLLALVLTI LFVVKGSIMF PAAAALAWAV LVYIGIDFGF WSKVFDMSAG
AERVWRASGE AILAATLLVF LFAYLNLSRW HVRYSHITLG WLAFLGSLVG LALFDPAVAS
GIARMSLVLI AFAGFGLVVY LSTHGFDRAV LLIPTWFLLV IWVIASGMAV AGSVTNDIVG
PALLGGLVLI VMLIGFTVMQ HAFAGSGATG GVVSDVERRA LALIGSGDLI WDWDVSADKV
FTSPETEALL GLKRGALEGS AASWLEVLHP LDQDRFRAAL DSVLDQRRGR LTQHFRLRTP
DGHFMWFALK ARPVVGADGE VTRVVGTLTD VTEAKNAEER MLHDSVHDNL TGLPNRKLFM
DRLGAVANFA KTMPTLRPTL MVIDLDRFKQ VNDSVGIAVG DSILLTLARR LTRILKPQDT
LARIAGDQFG LILLSEQDPA KITAFAETIR KTIKAPIAFN DREIFLTASI GLALSDPQTQ
LSDEIIKDAE LAMYHSKRIG GDRIDVYKPA MRARKSDRLT LESELRRAIE RQEITILYQP
IVRLEDRSVA GFEALARWDH PKLGRMAPSE FIAIAEEIGL IVELGLFVMD QTAKQLAIWQ
RAMRAREPIF ASVNVSSRQL LRHDLLHDIR TVLSRSSIAR GTLKLELTES LVMENPEHAA
QMLTRIRELG TGLSLDDFGT GHSSLAYLQR FPFDTIKIDQ SFVRTTSRGT RPVILKSIIA
LAHDLGMDVV AEGAETDSDA VELYQLGCEY AQGFAFGEPM DADAAMRLLT EERLEAAS
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