| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4458 |
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| Symbol | |
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| ID | 3912274 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 5047003 |
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| End bp | 5047932 |
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| Gene Length | 930 bp |
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| Protein Length | 309 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637886361 |
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| Product | histone deacetylase superfamily protein |
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| Protein accession | YP_488052 |
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| Protein GI | 86751556 |
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| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0695577 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACGC TCTTTCTGAC CCATTCCGCG TGTCTCGAGC ATCACACGCC GGAGGGCCAT
CCCGAACGCG CCGAGCGGCT GATCGCCGTC AACGAGGCGC TGACCGCGGA GCGGTTTTCG
ATGCTGTCGC GCGGCGAGGC GCCGATCGGC TCGCTCGAGC ACATCGCGCT GTGCCACACC
GATCACCACA TCGTCGAGAT GCGCCACATG GCGCCCTCGA CCGGCATCGT CTATGTCGAC
GGCGACACCT CGATGTCGCC GGGCACGTTC GAAGCCGCGT TGCGCGGCGT CGGCGGCGCG
GTGTCGGCGG TCGACGCGGT GATGAAGGGC TCGGCCGCCA ACGCCTTCGT GGCGACGAGG
CCGCCCGGTC ACCACGCTGA AGTCACCAAG CCGATGGGCT TCTGCTTCTT CGGCAACGCC
GCGATCGCGG CGCGCTATGC GCAACGCAAA TACGGCATCG AACGCGCCGC GGTGGTGGAT
TTCGACGTCC ACCACGGCAA CGGCACGCAG GACATCTTCT GGGGCGACCG CACCGTGATG
TACTGTTCGA CGCACCAGAT GCCGCTGTTC CCCGGCACCG GCTCGGCCGG CGAGCGCGGA
GAGCACGACA ACATCGTCAA CGCGCCGCTG GCCTCGGAAG ACGGCGGCAA GGAGTTCCGT
TTCGCGTTCG AGACCGTGAT CCTGCCGCAG CTCACGCGGT TCGCGCCGGA ACTGATCGTG
ATCTCCGCCG GCTTCGACGC GCACTACCGC GATCCGCTGG CCAGCCTCAA TCTCAAGGCC
GAAGACTTCA CCTGGGTGAC GCAGAAGCTG ATGGAGGTCG CCGACAAGAC CGCGGGCGGC
CGCATTGTCT CGGTGCTCGA GGGCGGCTAT GACTTGCAGG GCCTGAGTGA ATCGGTCGCC
GCTCATGTCG GCGCGCTGAT GGGCGCCTGA
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| Protein sequence | MTTLFLTHSA CLEHHTPEGH PERAERLIAV NEALTAERFS MLSRGEAPIG SLEHIALCHT
DHHIVEMRHM APSTGIVYVD GDTSMSPGTF EAALRGVGGA VSAVDAVMKG SAANAFVATR
PPGHHAEVTK PMGFCFFGNA AIAARYAQRK YGIERAAVVD FDVHHGNGTQ DIFWGDRTVM
YCSTHQMPLF PGTGSAGERG EHDNIVNAPL ASEDGGKEFR FAFETVILPQ LTRFAPELIV
ISAGFDAHYR DPLASLNLKA EDFTWVTQKL MEVADKTAGG RIVSVLEGGY DLQGLSESVA
AHVGALMGA
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