| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4403 |
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| Symbol | |
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| ID | 3912218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 4989077 |
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| End bp | 4991398 |
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| Gene Length | 2322 bp |
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| Protein Length | 773 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637886308 |
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| Product | TonB-dependent siderophore receptor |
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| Protein accession | YP_488000 |
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| Protein GI | 86751504 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
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| TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor
[TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.109366 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAAT CAGTTGGTCC GGCTGCTCTG TTTGTCTCGA GCCTCAGCGC GCTGTCGCTT
TCCGAAAGCG CACTGGCACA GGCGCCGTCT TCGCCGGCCG CCACGACGCT CGCACCGGTC
GAAATCATCG CCCCGCAGGT GCGGCCGCGG CCCCCGGGCC GCGTTCGCGC TTCGCAGAAT
CCCCGTCGCG GAGCGGCGAC CCGGCCACGC CCGCGTGAGG TTGCAACCCC GACGTCCGCT
CCTCCCGTGC CCGCCGTCCC CCCGCAGACC GCAACCGTCG GGCAGCCCCC GGTGCCCTAT
GTGGGCGGAC AGGTCGGAAC CGGCGCGCGG CTTGGTTTCC TGGGAAACAC CTCCGTCTTC
ACGGCGCCGT TCAGCGTCAC GGGGTACACA TCGAAGCTCA TGGAGGATCA GCAGGCGCGC
AGTGTCGCGG ACGTCGTCCT CAACGATCCC TCGGTGCGTA ACGACGCGCC GCCGTTCAGC
GAACGCGACT CGTTCTTTAT CCGCGGTTTT TCGGTGACCA ATCTCGACAC CGCCTATGAC
GGGCTGTTCT ACCTCGCGAA TCCGCGCCGC GCCTTCCTCG AAGGAATCGA GCGTGTCGAA
ATCCTCAAGG GCCCGAGCGC ATTGCTCAGC GGCGGCACCG GGCGCGTCGG CGGAACCATC
AATCTGATTC CGAAGCGCGC CACCGACGAA CCGCTGACGC GGCTGACGAC CAGCTACACC
AGCAACTCGC AAATCTGGAA CCACCTCGAT CTCGGTCGTC GCTTCGGAGA CAACAAGGAG
TGGGGCGTCC GCTTCAACGG CTCCTACCGC AACGGCGACA CGCCGCTGGA TCTCAATTCG
GCCGAGGTCG GTGTCGCCGC CCTCGGTCTC GACTATCGCA GCGAACGCTT CCGGGCGTCG
CTGGACCTCA ACGGCTCGAT TCAGAACATC ACGGCACCGA CGTCGCTGTT CAATTCCGCG
GCCGCGAACA TCGTCGTCCC ACCCGCGCCG AACGGCCGCA TCAATACGTC GAGCCGCGAC
GAATTCATCG ACAGCCGCTA CAAGATGATC GCCGGACGCG CCGAATACGA TCTCTTGCCG
GACACCACCA TGTACCTGGC CGGCGGTGGC AGCCAATACA ACGAGGACTT CCTCACGTCG
TCCTACCGAA TCACCAATTC GAACGGCACG GCCACCAACA CGCTCGCGGT TCAGCCCCAG
AAGCTCGAAG GATACACCGG CGAGATCGGC GTGCGTTCGA AATTCCGGAC CGGCGTCGTC
GGTCATCAGT TGAACGTCTC GGCGGTCGAA GCGAACAACG AGCTCTACCG CGGCGGCACT
CTGGGCTTCA CCTCCTTCAG CTACGTGACC AACATCTACG ATCCGGTCCG CCTGCCGCAG
GGCAGGTTCC AGACCAGCGG TTTCGCCACA TCCGACGACA GGCCCTTGCT GTCGCGGCTC
ACCGCTCGCA GCGCCGCGAT ATCCGACACG CTGTCGCTGC TCGACGACCG GCTGCTTGTG
ACGCTCGGCG GTCGCTGGCA GGACATCCTG CTGCGGGGAT TTGTGACGGC GTCGGGCCCC
ACCCTCGGCA CGGAATCGTC GCGCTATCAG GAGGCTCGTT TCAGCCCGGC CGTGGGCGCG
GTGATCCGCG CGACCGATCA GCTGTCGTTC TACGGAAACT ACATCGAGTC GCTCGAATCG
GGACCGACGG CGCCGGCCCT CGCGAACAAT CGCAATACGG TGTTTCCGCC GGTGGTCAGC
AAGCAGCAGG AGGTCGGCGC CAAATACGAT CTCGGAATCG TCGGGCTGAC GGCGTCGCTG
TTCCAGATCG AACAGCCGAA CGCCTTCACC GATCCGACCA CCAACATCTT CTCCGTCAGC
GGTCTGCAGC GCAACCGCGG CATCGAGCTG AGCGTTTTCG GCGAACCGGT CAAGGGCGTC
CGTCTGCTCG GCGGCGTCAC CCTCATGGAC GCCAAGCTCG TTTCCACGAT CGGCGGCCGC
TACGACGGCA ACGACGCGCC CGGCGTTCCG GTCACCGCGC TGAACCTCTA TGGCGAATAC
GATCTGCCCC ATTGGCTGGC GCAGGGCGTG ACGGTGACCG GCCGGGCGAT CTACACCGGC
GACGTGTTCT ACGATCAGGC GAACACGCAG ACCGTCTCCG ACTGGACACG GTTCGACATC
GGCGCGCGGT ATGCGTTCAC GGGGCCTTCG GGCAAGCCGG CCGTGCTGCG GGCCACCATC
GAGAACGTGG CCGATACGGC CTACTATCTC TCCGCCGCGC GTGGCTATCT CGCAGTCGGT
GCACCGAGGA CCTACATGGT GTCGGCGACG TTCAATTTCT GA
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| Protein sequence | MKKSVGPAAL FVSSLSALSL SESALAQAPS SPAATTLAPV EIIAPQVRPR PPGRVRASQN
PRRGAATRPR PREVATPTSA PPVPAVPPQT ATVGQPPVPY VGGQVGTGAR LGFLGNTSVF
TAPFSVTGYT SKLMEDQQAR SVADVVLNDP SVRNDAPPFS ERDSFFIRGF SVTNLDTAYD
GLFYLANPRR AFLEGIERVE ILKGPSALLS GGTGRVGGTI NLIPKRATDE PLTRLTTSYT
SNSQIWNHLD LGRRFGDNKE WGVRFNGSYR NGDTPLDLNS AEVGVAALGL DYRSERFRAS
LDLNGSIQNI TAPTSLFNSA AANIVVPPAP NGRINTSSRD EFIDSRYKMI AGRAEYDLLP
DTTMYLAGGG SQYNEDFLTS SYRITNSNGT ATNTLAVQPQ KLEGYTGEIG VRSKFRTGVV
GHQLNVSAVE ANNELYRGGT LGFTSFSYVT NIYDPVRLPQ GRFQTSGFAT SDDRPLLSRL
TARSAAISDT LSLLDDRLLV TLGGRWQDIL LRGFVTASGP TLGTESSRYQ EARFSPAVGA
VIRATDQLSF YGNYIESLES GPTAPALANN RNTVFPPVVS KQQEVGAKYD LGIVGLTASL
FQIEQPNAFT DPTTNIFSVS GLQRNRGIEL SVFGEPVKGV RLLGGVTLMD AKLVSTIGGR
YDGNDAPGVP VTALNLYGEY DLPHWLAQGV TVTGRAIYTG DVFYDQANTQ TVSDWTRFDI
GARYAFTGPS GKPAVLRATI ENVADTAYYL SAARGYLAVG APRTYMVSAT FNF
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