| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4330 |
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| Symbol | |
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| ID | 3912143 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 4912962 |
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| End bp | 4915082 |
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| Gene Length | 2121 bp |
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| Protein Length | 706 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637886234 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_487928 |
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| Protein GI | 86751432 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.200779 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTGCAGC CTGAGGCTAC GGTCGATCAC GCGCCCGCGC CGGTGAAAGT CGAGTTCGAC
AATTTCGAGC ACGGCTTTCC AGCCGGGTTC GGGCCGCGCG GCTGGCGCCA TCTGGCCTAT
GGGGTGGCGA TCGCCTTCGC GGTGTTTCAG CTCGTCATCG CGGCCTGGAA CGTGCTGCCG
AGCCAGGTGG TGCGCGGCGT CCATGTCGGC TTCCTGGTGC TGCTGACCTT CGGGCTGATC
GGCAATTTCA CCGCGCGCAG CGATTTCGGC CGCGCGGTGG CCTGGTCGAT CGGCGCGCTC
GGCTTCCTGT GCGGGCTGTA TCAGTGGATC TTCTATGCCG ATCTGATCCT GCGTGACGGC
GATCCGACCC ATCTCGACCT CGCGGTCGGC ACGCTGCTCG CGGTGCTGAT CTTCGAGGGC
ACGCGGCGGC TGATGGGCCC GGCGCTGCCG ATCATGTGCG GCGTCTGCCT GCTGTACTGG
TTTCTCGGCC AGTATCTGCC GGCGCCGTTC AATCATCGCG GCTATGATTT CGATCAGGTC
GTCACCCATC TGTCGTTCGG CACCGAAGGT TTCTACGGCG TGCCGATCTA CGTGTCGGCG
ACCTACATCT TCCTGTTCAT CCTGTTCGGC TCGTTCCTCG AGCGCGCCGG CATGATCCAG
CTGTTCACCG ATGTCTCGCT CGGCCTGTTC GGCAGCACCC GCGGCGGCCC CGCCAAGGTC
GCGGTGTTCG CCTCGGGGAT GATGGGCACG ATCTCCGGCT CCGGCGTCGC CAATGTCGTC
ACCGTCGGCC AGTTCACCAT TCCGCTGATG ATCCGCTTCG GCTATCGCCG GGCCTTCGCC
GCCGGCGTCG AGGCCACCGC CTCGATGGGC GGGCAGATCA TGCCGCCGGT GATGGGCGCG
GTCGCCTTCA TCATGGCCGA GACGCTCGGC GTCGACTATT CGGTGGTGGT CAAGGCCGCG
GTGATCCCGG CGTTCCTGTA CTTCGCCTCG GCGTTCTGGA TGGTGCATCT GGAGGCCGGC
AAGCACGGCC TGGTCGGCAT GAAGAAATCC GAGATCCCGA GCGCGATGCG CGCGGTGATC
GACCGCTGGT ACCTGATCCT GCCGCTGGCG GCGCTGGTCT ACATGCTGTT CGAGGGCTTC
ACGCCGCTCT ACGCCGGCTC GATGGGGCTG GCGCTGACGG TGGCGCTGAT CCTCGGCGCC
AGCATCGTGC ACGGCTTCTC CAACCAGGTG CTGCGCTACG TGTTCTGGAT CGGGCTGGCG
CTGGTGGCCG GCGCGGTGCT GAACGACGGG CTCGACATCA TGAAGGTGAT CGTGGTGGTC
GCGGTGCTGA TCGCGTTCAC CGCGATCACC CGCGGCGGCC GGGCCACGCT GGCGGCCTGC
CGCGATTCGC TGGCCGACAG CGCCAAGTCG GCGCTCACCG TCGGCATGGC CTGCGCCATC
GTCGGCACCA TCATCGGCAT GATGACACAA ACGGGGGTCG GCACCGTGTT CGGCGGCTGG
GTGATCAGCT TCGGCGAGAA GAGCCTGTTC CTGGCTCTGG TGATGACCAT GCTGCTGTCG
ATCCTGCTCG GCACCGGTAT CCCGACGATC CCGACCTACA TCATCACCGC CGCATTGGCC
GCGCCGGCGC TGGCCCAGCT CGGCGTGCCG CTCTTGGTCA GCCACATGTT CGCGTTCTAC
TACGGCATCA TGGCGGATCT GTCGCCGCCG GTGGCGCTGG CGGCGCTCGC CGCCGCGCCG
ATCGCCAAGG AAAATCCTGA CAAGATCGGC TGGGAGGCGA TGCGGATCGC GCTCGCCGGC
TACGTCATCC CGTTCATCGC GGTGTACTCA CCGGCGCTGA TGCTGCAGCC CGGCGACCCG
ATGGCAGCGC AGCTCGGCTT CTACGGCGCG GTGCTCTACG CCACGTTGAA GGCGCTGATC
GCGATCGGCC TGTTCGGCAT GGTGTCGATC GGTTTCCTGT ACACCCGCAT GAACGTGCTC
GAGCGGCTCG TCGCCTTCGC CGCCAGCGTC TGCCTGCTCG GCGAATTTCC CTACAGCGAC
TATGTCGGCT TCACCATCGC GGCGCTGGTG GTGGCGTGGC AATGGCGGCA GCGGTCGCGC
AACGCGGTGG CGGCTGCGTG A
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| Protein sequence | MLQPEATVDH APAPVKVEFD NFEHGFPAGF GPRGWRHLAY GVAIAFAVFQ LVIAAWNVLP
SQVVRGVHVG FLVLLTFGLI GNFTARSDFG RAVAWSIGAL GFLCGLYQWI FYADLILRDG
DPTHLDLAVG TLLAVLIFEG TRRLMGPALP IMCGVCLLYW FLGQYLPAPF NHRGYDFDQV
VTHLSFGTEG FYGVPIYVSA TYIFLFILFG SFLERAGMIQ LFTDVSLGLF GSTRGGPAKV
AVFASGMMGT ISGSGVANVV TVGQFTIPLM IRFGYRRAFA AGVEATASMG GQIMPPVMGA
VAFIMAETLG VDYSVVVKAA VIPAFLYFAS AFWMVHLEAG KHGLVGMKKS EIPSAMRAVI
DRWYLILPLA ALVYMLFEGF TPLYAGSMGL ALTVALILGA SIVHGFSNQV LRYVFWIGLA
LVAGAVLNDG LDIMKVIVVV AVLIAFTAIT RGGRATLAAC RDSLADSAKS ALTVGMACAI
VGTIIGMMTQ TGVGTVFGGW VISFGEKSLF LALVMTMLLS ILLGTGIPTI PTYIITAALA
APALAQLGVP LLVSHMFAFY YGIMADLSPP VALAALAAAP IAKENPDKIG WEAMRIALAG
YVIPFIAVYS PALMLQPGDP MAAQLGFYGA VLYATLKALI AIGLFGMVSI GFLYTRMNVL
ERLVAFAASV CLLGEFPYSD YVGFTIAALV VAWQWRQRSR NAVAAA
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