| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4328 |
|---|
| Symbol | |
|---|
| ID | 3912141 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 4911504 |
|---|
| End bp | 4912376 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637886232 |
|---|
| Product | Short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_487926 |
|---|
| Protein GI | 86751430 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.269843 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGGTTG CGCTTCGCTT CATCCGGGCT ACAACGCTTC CCAAGACGCA ACGACGAAAG
AAGACACGCA TGCCACGACT TGAAGGCAAG ACCGCGCTGG TGGTCGGCGC CGGTTCGATC
GGGCCGGGCT GGGGCAACGG CAAGGCGACC GCGGTGACGT TCGCGCGCGA GGGCGCGCAG
GTGTTCTGCG TCGACCGCAA TCGCGACGCC GCGCAGGAGA CCGTCGACAT CATCAAATCG
GAGGGCGGCC GCGCCATCGC GTTCGCCGCC GACGTGTCGC GCGCGGCCGA TGTCGAGGCG
ATGGTGAAAG CCTGCGTCGA CGCCTGGGGC GGCATCGACG TGCTCGACAA CAATGTCGGC
ATCGCCGAAA CCGGCGGCGT GGTCGAGGTC TCCGAGGCCG AGTGGGACCG CGTGTTCGCG
GTCAATCTGA AGAGCGCCTT CCTGGCGATG AAACACGTCG TCCCGATCAT GCAGCGCCAG
GGCGGCGGCT CGATCATCAA TATCTCGTCG ATCGCCTCGA TCCGGCATCT CGGCATCTCC
TACGTCACCT ACGCGGCGTC GAAGGCGGCG ATGAATGCGA TGACGCGCAC CACCGCAGTG
GAATACGCCA AGGACCACGT CCGGGTGAAC TGCATCCTGC CCGGCCTGAT GAAGACGCCG
ATGGTCGCGC ATTCCGCGGG GCTGGCGGCG AGCTACGCCG CCGGCGACGT CGAGGCGATG
TGGCGCGCGC GCGACGCGCA GGTGCCGATG GGGCACATGG GTGACGCCTG GGATGTCGCA
AATGCCGCAT TGTTTCTCGC CAGCGACGAG TCGAAATACG TCACCGGCCT CGAATTGGTG
GTCGACGGCG GCCTGACGCT GAAGGTGAAC TGA
|
|---|
| Protein sequence | MPVALRFIRA TTLPKTQRRK KTRMPRLEGK TALVVGAGSI GPGWGNGKAT AVTFAREGAQ
VFCVDRNRDA AQETVDIIKS EGGRAIAFAA DVSRAADVEA MVKACVDAWG GIDVLDNNVG
IAETGGVVEV SEAEWDRVFA VNLKSAFLAM KHVVPIMQRQ GGGSIINISS IASIRHLGIS
YVTYAASKAA MNAMTRTTAV EYAKDHVRVN CILPGLMKTP MVAHSAGLAA SYAAGDVEAM
WRARDAQVPM GHMGDAWDVA NAALFLASDE SKYVTGLELV VDGGLTLKVN
|
|---|
| |