Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_4245 |
Symbol | |
ID | 3912058 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | + |
Start bp | 4826867 |
End bp | 4828909 |
Gene Length | 2043 bp |
Protein Length | 680 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637886150 |
Product | peptidase M23B |
Protein accession | YP_487844 |
Protein GI | 86751348 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0739] Membrane proteins related to metalloendopeptidases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.442759 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTCACGGG GACGCAGCCA CGGGCGCGAG GTCGGTTTCA TCGACCTCGG CCACGAGCCC CCGCTTTCCG TCGATGGCAC TGAAGCCGCG GTGATCGATC GCCGTCGCGT CTCGGTCCAA TGGTTCAGCG GCACGATTCT GACCGGCCTG TGCGGCGCAG CCTTGATCGG CGGCGCCGTT TTCGCGTCGC TCGACGGCGA AATGACCTTC GCCAAGGCGC CCGAGCGGGT CGAGGCCGCG CTGCGCGGCG CCTTCGGCGC CGACAAGAAC GCCGCCCTGC ACAAGAGCGA CCGCCTGCCC CCGCCCAGCG AATCGCAGGC CGCGCGCAAC GTGATCCGGG TCTCCTCGGT CTCGCGCGTC GGCAATCGCG ACGTCGTCCG GGTGCGGCCC TACATCAAGA TCGCCGGCAA TCTGTCGCTG TCGACCACCG AACTGTCGGC CAAGATCCCG CCGTTCAACG CCCAGCGGAT GCTCAGCGAC GTCGGCGCCG CGGCGCCGGC GGCGGAAGAC GCGCAGAATC CCGACGCCGT CGAGCCCGAC GCCGAAGTCT CGTTCATCAC CCGCGATCTC GGCCAGGTGC TGCCGCGGGC GAAGATCGCA GGCTTCATCC CGCCCGACGA AATCCTGATG CGGGTGCGCG ACGCGGCGAA CTGGAAGGGC AATAGCGGCG TGCGCTACGC CAGCGCCACC GCCGGGGATA TCGGCGGCGG CGGCGGCGAT ATGCGGCTCG GCTACGCGCC CGAAGGCGCC TCCGCCGACC CCTATGCGGG TTTCGAGACC CGCATCGTGC CGGAAAACGT CACGCTGCTG CCGAAGACCA AGGAGCAGGT GACCGGCGGC AATGCCTCCG GCGAGCGCGT CCACATCGTC AAGAAGGGCG ACACCGTCGT TTCGGTGCTG CGCGACCAGG GCGCCAGCGA GCTGGACGCC AATGCGGTGG CCCAAGCGCT CGGCGCGCGC GGCCGCAACG GCGGGCTGAA GGAAGGCCAG AAGCTGCGGA TCCTGATGGA GCCCTCCGGC GCCGCCAAGC AGCCGCAGCC GTTCCGGGTG ATCATCGCCA ACGATTCGGC GGTCGAAGCG GTGGCGGCCT TGTCCGATCT CGGCCGCTAC GTCGCGGTCG ACGTCCAGGC CCTCAACACC GTCAGCGACA CCGCCGACAA CAGCGACGAG GACGAGGACG ACGGCACCGG CGTGCGGCTG TATCAGTCGA TCTACGAGAC CGCGATGCGC AACAAGGTGC CGCAGGCGAT CATCGACGAC ATGATCAAGA TCTACTCCTA CGACGTCGAT TTCCAGCGCA AGGTGCAGGC CGGCGACTCG TTCGAGGTGT TCTACGCCGG CGACGACGAG ACCACCACAA CGGTCGAGAA GAACGACGTG CTGTTCGCCG CGCTCACCGT CGGCGGCGAA ACCAAGAAAT ACTACCGCTT CCAGACCCCC GACGATTCGG TGGTGGATTT CTACGACGAG AGCGGCAAGA GCGCGAAGAA GTTCCTGGTG CGCAAGCCGG TCAACAACGC GATCATGCGC TCCGGCTTCG GCGGCCGCCG CCATCCGATC CTCGGCTACG TCAAGATGCA CACCGGCGTC GACTGGTCGA CGCCCTACGG CACCCCGATT TTTGCCTCCG GCAACGGCGT GATCGAAAAG GCCGGCTGGG AAGGCGGCTA CGGCAAATAC ATCCGGATCA AGCACAACAA CGGCTACGAG ACCGCCTACG GCCACATGTC GGCCTTCGCC AAGGGCATGG AGCCCGGCAA GCGGGTCCGC CAGGGCCAGG TGATCGGCTT CGTCGGCTCC ACCGGCCTCT CCACCGGCGC GCATGTGCAT TACGAAATTC TCGTCAACGG CCGCTTCGTC GACCCGATGC GGGTGAAACT GCCGCGCGGC CGCTCGCTCG AAGGCCCGCT GCTGGCGTCC TTCGAGAAAG AGCGCGACCG CCTCGACGCC ATGCTGACCG GCCGCGGCGC CGGCCGCTTC GCCGAAGACC TCACCGCAGC CACCCCGGTG CGCAGCGTCA ACGCGGCGGC GGCGCGGAAG TAA
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Protein sequence | MSRGRSHGRE VGFIDLGHEP PLSVDGTEAA VIDRRRVSVQ WFSGTILTGL CGAALIGGAV FASLDGEMTF AKAPERVEAA LRGAFGADKN AALHKSDRLP PPSESQAARN VIRVSSVSRV GNRDVVRVRP YIKIAGNLSL STTELSAKIP PFNAQRMLSD VGAAAPAAED AQNPDAVEPD AEVSFITRDL GQVLPRAKIA GFIPPDEILM RVRDAANWKG NSGVRYASAT AGDIGGGGGD MRLGYAPEGA SADPYAGFET RIVPENVTLL PKTKEQVTGG NASGERVHIV KKGDTVVSVL RDQGASELDA NAVAQALGAR GRNGGLKEGQ KLRILMEPSG AAKQPQPFRV IIANDSAVEA VAALSDLGRY VAVDVQALNT VSDTADNSDE DEDDGTGVRL YQSIYETAMR NKVPQAIIDD MIKIYSYDVD FQRKVQAGDS FEVFYAGDDE TTTTVEKNDV LFAALTVGGE TKKYYRFQTP DDSVVDFYDE SGKSAKKFLV RKPVNNAIMR SGFGGRRHPI LGYVKMHTGV DWSTPYGTPI FASGNGVIEK AGWEGGYGKY IRIKHNNGYE TAYGHMSAFA KGMEPGKRVR QGQVIGFVGS TGLSTGAHVH YEILVNGRFV DPMRVKLPRG RSLEGPLLAS FEKERDRLDA MLTGRGAGRF AEDLTAATPV RSVNAAAARK
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