Gene RPB_4172 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_4172 
Symbol 
ID3911980 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp4743086 
End bp4744474 
Gene Length1389 bp 
Protein Length462 aa 
Translation table11 
GC content68% 
IMG OID637886076 
Productperiplasmic sensor signal transduction histidine kinase 
Protein accessionYP_487775 
Protein GI86751279 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.583754 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACGC TCGCCACCGG CCTGACGCTG ATCCGCTCCG CCAGGCGGCG GGTGTCGGCC 
GCCAATGGCT GGATGGGGCA GCGCTTCAAC GACTTCATGC CGAAGGGGCT GTACGCCCGC
GCGCTGTTGA TCATGATCGT GCCGATGGTG CTGCTGCAAT CGGTGATCGC CTTCGTGTTC
ATGGAGCGGC ACTGGAACAC GGTGACGCAG CGGCTGTCGG CGGCGGTGGT GCAGGACATC
GCGGCGCTGA TCGACGTCTA CAAGAGCTAC CCGCAGGACA AGGACAACGC CGCGCTGCGC
CGGATCGCGC AGAACCGGCT CGGTCTGGTG GTGGATTTCC TCGGCCCGAA CGAGATGCCG
CCGCCGGGCA GCAAGCCGTT CTTCTCGCTG CTCGATCAGT CGATCAGCAA GCAGATCAGC
AAGCAGATCG CGCGGCCGTT CTGGATCGAC ACCGTCGGCC GCTCCAATCT GGTCGAAATC
CGCATCCAGC TCGACGATGC GGTGATGCGG GTGTTCGCGC TGCGCAGCGC CGCCTACGCG
TCGAATTCGG AAATCTTCCT GTTGTGGATG GTCGGCACCT CGGCGGTGCT GCTGGTCGTC
GCGGTGCTGT TCCTGCGCAA CCAGATCCGG CCGATTCTGC GGCTCGCCGA CGCCGCCGAG
AGCTTCGGCA AGGGCCGCGA CGCGCCGAAC TTCAAGCCGC GTGGCGCCCG CGAGGTGCGG
CGGGCGGCCT ACGCCTTCAT CGAGATGAAG ACCCGCGTCG AGCGCTCGAT CGAGCAGCGC
ACCGCGATGC TGGCCGGCGT GTCTCACGAT CTGCGCACCA TCCTGACCCG GTTCAAGCTC
GAACTCGAAC TGATCGGCGA CGCGCCGGAG ACCGACGGCA TGCGCAAGGA CGTCGACGAG
ATGTCGGCGA TGCTCGAGGC CTATCTCGCC TTCGCCCGTG GCGACAGCGG CGAGCGGGCG
CAGCCGACCG ACATGGCGGC GGCGCTCGAG GAACTACGCA GCGACGCCGA GCGTCACGGC
CACCGCGCCA CTGTGGCGTT CTCCGGCCAG CCGGTGGTGA CGGTCAAGCC GGCGTCGTTC
AAGCGCTGCC TCGCCAATCT GGTGTCGAAC GCGGCGCGCC ACGCCGACGC CATCGCCATC
ACCGGCCAGC GCGATCACCG CTATCTCACG GTGATGATCG ACGACGACGG TCCCGGCATT
CCGATGGCGA TGCGCGAGGA AGTGTTCAAG CCGTTCTTGC GGCTCGACGA CGCCCGCAAC
CAGGACGAAG GCGGCACCGG CCTCGGCCTT GCGATCGCCC GCGACATCGC CCGCTCGCAT
GGCGGCGACA TCACGCTGGG CGACAGCCCG ATGGGCGGCT TGCGCGCGAC GGTGCGGGTG
CCGGTGTAG
 
Protein sequence
MSTLATGLTL IRSARRRVSA ANGWMGQRFN DFMPKGLYAR ALLIMIVPMV LLQSVIAFVF 
MERHWNTVTQ RLSAAVVQDI AALIDVYKSY PQDKDNAALR RIAQNRLGLV VDFLGPNEMP
PPGSKPFFSL LDQSISKQIS KQIARPFWID TVGRSNLVEI RIQLDDAVMR VFALRSAAYA
SNSEIFLLWM VGTSAVLLVV AVLFLRNQIR PILRLADAAE SFGKGRDAPN FKPRGAREVR
RAAYAFIEMK TRVERSIEQR TAMLAGVSHD LRTILTRFKL ELELIGDAPE TDGMRKDVDE
MSAMLEAYLA FARGDSGERA QPTDMAAALE ELRSDAERHG HRATVAFSGQ PVVTVKPASF
KRCLANLVSN AARHADAIAI TGQRDHRYLT VMIDDDGPGI PMAMREEVFK PFLRLDDARN
QDEGGTGLGL AIARDIARSH GGDITLGDSP MGGLRATVRV PV