Gene RPB_4160 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_4160 
Symbol 
ID3911968 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand- 
Start bp4732673 
End bp4733296 
Gene Length624 bp 
Protein Length207 aa 
Translation table11 
GC content63% 
IMG OID637886064 
Productpeptidyl-tRNA hydrolase 
Protein accessionYP_487763 
Protein GI86751267 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0193] Peptidyl-tRNA hydrolase 
TIGRFAM ID[TIGR00447] peptidyl-tRNA hydrolase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.199794 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCTTGT TTGTCGGGCT GGGCAATCCG GGTACGAAGT ATCAGGACAA CCGGCACAAC 
ATCGGGTTCA TGGTCATCGA CGAGATCGCA CGGCGTCATG GCTTCTCGCC ATGGCGCCGT 
CGCTTTCAGG GCGAGACATC GGACGGCGCG CTCGACGGCG AGCGGATCAC GCTGTTGAAG 
CCGCTCACCT ACATGAACGA GTCCGGCCGC GCCGTGCAGG AAGCCGCGAG CTTCTACAAG 
ATCGGGCAGG GTGAGGTCGC GGTGTTTCAC GACGAGATCG AACTGCCGCC GGCGAAGGTC 
CGGGTCAAGG TCGGCGGCGG CATCGCCGGA CACAACGGCC TGCGCTCGAT CTCGGCGCAT 
ATCGGCAACG ACTATCTGCG GGTGCGGCTC GGCGTCGGTC ACCCCGGCGT GAAGGAAATG 
GTTCACGGCC ACGTGCTCGG TGATTTCGCC AAGAGCGAGC GGCCCTGGGT CGCGGCGCTA 
TGCGAGATCG CCGCCGACAA TGCCGGCCTG ATCGCCAAGG GCAAGGACGC CAGCTTCGCC 
AACAAGGTGC ATCTGGCGAT GCAGGCCAAG GGATTTTTGG ACGAAGACAA GAAGAAGTCT 
GGCGACAACA AGGTCGCCAA GTAA
 
Protein sequence
MRLFVGLGNP GTKYQDNRHN IGFMVIDEIA RRHGFSPWRR RFQGETSDGA LDGERITLLK 
PLTYMNESGR AVQEAASFYK IGQGEVAVFH DEIELPPAKV RVKVGGGIAG HNGLRSISAH 
IGNDYLRVRL GVGHPGVKEM VHGHVLGDFA KSERPWVAAL CEIAADNAGL IAKGKDASFA 
NKVHLAMQAK GFLDEDKKKS GDNKVAK