| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4131 |
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| Symbol | |
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| ID | 3911939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 4703578 |
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| End bp | 4705722 |
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| Gene Length | 2145 bp |
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| Protein Length | 714 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637886035 |
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| Product | RNA polymerase sigma factor RpoD |
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| Protein accession | YP_487734 |
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| Protein GI | 86751238 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.138863 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAGCA AGGCGAAGAC GGTTCAGTTG AAAGACAAGG AAAAGGACGA CAAGGCCGAC
GCGCCGGAGA AGGACTCCGC CGACGCTCCC TCGCCGTTGC TCGACCTGTC GGACGCGGCC
GTCAAGAAGA TGATCAAGCA GGCCAAGAAG CGCGGCTTCG TGACCTTCGA TCAGCTCAAC
GAAGTGCTGC CGTCCGACAC CACGTCGCCG GAGCAGATCG AGGACATCAT GTCGATGCTC
TCCGACATGG GCATCAACGT GTCCGAGGCG GAAGAGAGCG ACAGCGAGGA CGAGGACGCC
AAGGACGAGG CCGAGGAAGA GCCCGATAAC GACCTCGTCG AGGTCACCCA GAAGGCCGTC
ACCGAGACCA AGAAGTCCGA GCCCGGCGAG CGCACCGACG ATCCCGTCCG GATGTATCTG
CGCGAGATGG GCACCGTCGA GCTGCTGTCG CGCGAGGGCG AAATCGCCAT CGCCAAGCGG
ATCGAGGCCG GCCGCGAGGC GATGATCGCC GGACTCTGCG AAAGCCCGCT GACCTTCCAG
GCGATCATCA TCTGGCGCGA CGAGCTCAAC GAAGGCAAGA TCTTCCTTCG CGACATCATC
GATCTCGAAG CCACCTATGC GGGCCCCGAC GCCAAGGCCA ACATGAACCC TGCGATGGCC
GAGGGCGCCG GCGAGGAAGC CAGCGCCGAA GGCGAGGCCG ACGCCGGAGC GCCCGCGCAT
GTCGCGCCGC CCGCCGCGCC GCCGACGGCG ACGCCGTTCC GTCCCGCGCA GCAGCGCTCG
GCGCCCGCCG CGGCCCCGGC CGCCGGCGAG GGCGGCGGTG AAGGCGCCGC CGAAGGCGAC
ATGGACGACG ACGAGTTCGA GAACCAGATG TCGCTCGCCG CCATCGAGGC CGAACTCAAG
CCGAAGGTGG TCGAGACCTT CGACAAGATC GCCGACAACT ACAAGAAGCT GCGCAAGCTG
CAAGAGCAGG ACATCGCCAA CCAGCTCGAA AGCGCGTCGC AGGGGCCGTC GCTGTCGCCC
TCGCAGGAGC GCAAATACAA GAAGCTCAAG GACGAAATCA TCGTCGAGGT GAAGTCGCTG
CGGCTCAATC AGGCGCGTAT CGACTCACTG GTCGAGCAGC TCTACGACAT CAACAAGAAG
CTGGTGTCGT TCGAAGGCCG GCTGCTGCGC CTCGGCGACA GCCACGGCGT GGCGCGCGAG
GACTTCCTGC GCAACTATCA GGGCTCCGAG CTCGATCCGC GCTGGCTCAA CCGCGTCTCG
AAACTCTCCG CCAAGGGCTG GAAGAACTTC GTCCATTTCG AGAAGGACCG GATCCGCGAG
CTGCGCCAGG AAATCCAGTC GATGGCCGCG CTCACCGGGC TCGAGATCGG CGAATTCCGC
AAGATCGTGC ATTCGGTGCA GAAGGGCGAG CGCGAAGCCC GCCAGGCCAA GAAGGAAATG
GTCGAGGCCA ACCTGCGTCT GGTGATCTCG ATTGCCAAGA AATACACCAA CCGCGGCCTG
CAGTTCCTCG ATCTCATTCA GGAAGGCAAT ATCGGCCTGA TGAAGGCGGT CGACAAATTC
GAATATCGCC GCGGCTACAA ATTCTCCACC TATGCGACGT GGTGGATCCG GCAGGCGATC
ACGCGTTCGA TCGCCGACCA GGCCCGCACC ATCCGCATTC CGGTGCACAT GATCGAGACG
ATCAACAAGA TCGTGCGCAC CTCGCGGCAG ATGCTCAACG AGATCGGCCG CGAGCCGACC
CCGGAAGAGC TCGCCGAGAA GCTCGGCATG CCGCTGGAGA AGGTCCGCAA GGTCCTCAAG
ATCGCCAAGG AGCCGCTGTC GCTCGAAACC CCGGTGGGTG ACGAAGAGGA CAGCCATCTC
GGCGACTTCA TCGAGGACAA GAACGCGGTG CTGCCGATCG ACGCCGCGAT CCAGTCGAAC
CTGCGCGAAA CCACGACGCG CGTGCTCGCC TCGCTCACCC CGCGCGAAGA ACGCGTGCTG
CGCATGCGCT TCGGCATCGG CATGAACACC GACCACACGC TGGAAGAAGT CGGCCAGCAG
TTCTCGGTCA CCCGCGAACG CATCCGCCAG ATCGAAGCCA AGGCGCTGCG CAAGTTGAAG
CATCCGAGCC GGTCAAGGAA GCTGCGGAGC TTCTTGGACA ACTGA
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| Protein sequence | MASKAKTVQL KDKEKDDKAD APEKDSADAP SPLLDLSDAA VKKMIKQAKK RGFVTFDQLN
EVLPSDTTSP EQIEDIMSML SDMGINVSEA EESDSEDEDA KDEAEEEPDN DLVEVTQKAV
TETKKSEPGE RTDDPVRMYL REMGTVELLS REGEIAIAKR IEAGREAMIA GLCESPLTFQ
AIIIWRDELN EGKIFLRDII DLEATYAGPD AKANMNPAMA EGAGEEASAE GEADAGAPAH
VAPPAAPPTA TPFRPAQQRS APAAAPAAGE GGGEGAAEGD MDDDEFENQM SLAAIEAELK
PKVVETFDKI ADNYKKLRKL QEQDIANQLE SASQGPSLSP SQERKYKKLK DEIIVEVKSL
RLNQARIDSL VEQLYDINKK LVSFEGRLLR LGDSHGVARE DFLRNYQGSE LDPRWLNRVS
KLSAKGWKNF VHFEKDRIRE LRQEIQSMAA LTGLEIGEFR KIVHSVQKGE REARQAKKEM
VEANLRLVIS IAKKYTNRGL QFLDLIQEGN IGLMKAVDKF EYRRGYKFST YATWWIRQAI
TRSIADQART IRIPVHMIET INKIVRTSRQ MLNEIGREPT PEELAEKLGM PLEKVRKVLK
IAKEPLSLET PVGDEEDSHL GDFIEDKNAV LPIDAAIQSN LRETTTRVLA SLTPREERVL
RMRFGIGMNT DHTLEEVGQQ FSVTRERIRQ IEAKALRKLK HPSRSRKLRS FLDN
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