| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4125 |
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| Symbol | |
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| ID | 3911933 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 4696164 |
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| End bp | 4697942 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637886029 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_487728 |
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| Protein GI | 86751232 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.13437 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACACGAA ACACGATGCG CGCTCTCTGG AATCAGATCG CCACCAGTCT CAAGACGAAA
TTTCTGGTCG TGACGATCTG CGTGTTCGGC CTGGTCGCCC TGCCGGCCTA TGCGGCGTTC
GAATTCCTCA CCCGCAAGAC CGTGGTCGCG CTCGGCACGC TGTTCGCCGA GAAGCAGGTG
CTGTTCGATC GCTACCGCGG CCTCGAGGCG CTGATCCGCG AGGTCTCGTT GGCCGAGACG
GTCGCCCGCT CGCCGGCGGT GCGCGCCTGG GCCCGCGACG AGGCCGACCC CGACAAGACG
GTGCGCGGGC TGGCCGAACT CGAGCACTAC CGGCTGTCGT TTCACGACAA GAGCTATTTC
TTCGTCGTGC ACGAGTCGGG CAATTACTAC TTCAACGATG CCGACAACAA TTACAACGGC
AACCAGCTCC GCTATCAGGT CAAGCGCGAC AATTCGCGCG ACGGCTGGTA CTTCAAGACG
ATCGCGGCCG GTCAGGCCTG CCAGCTCAAC GTCGACCGCG ACGACAATCT CGCCGTCACC
AAAGTCTGGA TCAATTGCGT CATCACCGAT CAGGGCCGGA TTCTCGGCGT GATCGGCACC
GGCGTCGACC TCAGCGAATT CATCCGCGAG GTGGTGGCGT TGCCGCAGAC CGGCATCACC
AGCATGTTCG TCGATCGCGC CGGCGCCATC CAGGCGCACC GCGATCCGGG GATGGTCGAT
TTCCACAGCC TCACCAAGGA CACCAAGACC AAGAAGACGA TCTTCCAGCA GGTCGACAAG
CCGGCCGAGG CCGGCGAACT CGCCGCCATG ATGGCGCGCG TCTCCGCCGG CTCCAGGATG
GTCGAATCGC GCTTCATGAA CATCGGCGGG CGCGAATTCC TGGTCGGTGT CGGCTATCTC
GATCGGCTCG GCTGGTTCAA CGTGACGTTG ATGGACATCG ACGCCATCAT CGATCGCCGG
CTGTTCACGC CGATCGCGCT GCTGCTGGTG TTCATGATGA CCGCGGCGGT CGCGCTCGTC
ACCATCCTGT TCCGGCGCGT CGTGCTGGAT CGGCTGGCGA TCGTCGAGGC GGCCGCGCGA
CGGGTCGAAG ACGGCGATTT CGACAATATC GTGGTCGATC GCGGCAGCGA CGAGATCGGC
CGGCTGTCGC GGACGTTGTC CGGCATGGCG CATGCGGTGC GCGACCACAC CCGCATTCTC
GAGGATCTGG TCGACGAGCG AACCGAGAAG CTGCGGCGTC TCGCCAATAT CGATCTCTTG
ACCGAGATCC CCAACCGGCG CGGTTTCACC CAGGTGTTCG AGCAGTGGCT GGCCAGGTCG
CCTCTGGTGC CGCGGTCGGC CGGGCTGCTG CTGATCGATC TGGATGACTT CAAGGACGTC
AACGACGCGT TCGGCCATCT GGCCGGCGAT CGCCTGCTGT GCGAGACCGC GCGGCGGCTG
GCGCCGCTCC TCACCGACAG GGACATCTGC GCCCGCTGGG GCGGCGACGA GTTCGTCGTG
CTGGTCGAGG ATTGCGACCA GGACGGCCTG CGGGCGCTGT GCGCCCGCAT GGTCGCCGCG
ATGAACGCCA CGCCGATCCG CTCCGACGAT GGTCAGGACA TTGCGCTGAC GGTCAGCATC
GGCGGCTGTC GGGTGGTTTC GGGCAGTTCG ATCGACGCCG CCTTCGCGGA GGCCGATGCA
GCGCTCTACG CCGCCAAGCG CGCCGGTCGC AACCGGTTCG TGCTGTTCGA CGCCGACGCC
GGATCGGCGC TCGACGCGGT GGTGACGGCC AAGGCCTGA
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| Protein sequence | MTRNTMRALW NQIATSLKTK FLVVTICVFG LVALPAYAAF EFLTRKTVVA LGTLFAEKQV
LFDRYRGLEA LIREVSLAET VARSPAVRAW ARDEADPDKT VRGLAELEHY RLSFHDKSYF
FVVHESGNYY FNDADNNYNG NQLRYQVKRD NSRDGWYFKT IAAGQACQLN VDRDDNLAVT
KVWINCVITD QGRILGVIGT GVDLSEFIRE VVALPQTGIT SMFVDRAGAI QAHRDPGMVD
FHSLTKDTKT KKTIFQQVDK PAEAGELAAM MARVSAGSRM VESRFMNIGG REFLVGVGYL
DRLGWFNVTL MDIDAIIDRR LFTPIALLLV FMMTAAVALV TILFRRVVLD RLAIVEAAAR
RVEDGDFDNI VVDRGSDEIG RLSRTLSGMA HAVRDHTRIL EDLVDERTEK LRRLANIDLL
TEIPNRRGFT QVFEQWLARS PLVPRSAGLL LIDLDDFKDV NDAFGHLAGD RLLCETARRL
APLLTDRDIC ARWGGDEFVV LVEDCDQDGL RALCARMVAA MNATPIRSDD GQDIALTVSI
GGCRVVSGSS IDAAFAEADA ALYAAKRAGR NRFVLFDADA GSALDAVVTA KA
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