| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4104 |
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| Symbol | |
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| ID | 3911911 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 4673771 |
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| End bp | 4675444 |
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| Gene Length | 1674 bp |
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| Protein Length | 557 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637886008 |
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| Product | PAS/PAC sensor hybrid histidine kinase |
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| Protein accession | YP_487708 |
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| Protein GI | 86751212 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
[COG5002] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0461305 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCCGAGC GGCTGATCGC CGACAAGCTG CGAACAGCGG AAGACGCACG GACCCAGCAA
ATCGGAACCG GCATCGAACT GATCGCGCGC CGCAAGGACG GCAGCGAATT CCCGATCGAG
ATCATGTTGA GCCCGCTCGA CAGTCCCGAA GGCGTCCTGG TCACCGCTGC CATACGCGAC
ATCTCGGAGC GTAAGGACGC GGAAAAGCAC CTGGTGCAGA TGGAGGGACG ATACCAGGCG
CTGCTGGAGG CGGCGCCTGA CGCGATGGTG GTGGTGAATC AAACCGGGGA GATCGTCCTG
CTCAACCTGC AAGCGGAAAA GCAGTTCGCC TATCGTCGCG ACGAACTGCT CGGCCAGAAG
GTGACGAACA TCATCCCCGA AGGATTCGCC GAGCGGTTGA TCGCCGACCG GTTACGATCC
AGGGAAGATG CATTGGCCCA GCACATCGGC GCAGGAATCG AGCTCACCGG CCGGCGAAAG
GACGGCAGCG AATTTCCGAT CGAGATCATG CTCAGCCCGC TGGAAAGCGA AGGCAGCATC
CTGGTAACCG CCGCGATCCG CGAGATCAGC GCCCGCAAGC ACATGGAGCG CCTCAGGGAC
GAATTCGTCG CGACCGTCAG CCACGAATTG CGCACGCCGC TGACGTCGAT CTCGGGCTCA
CTCGGCCTTC TGGTGGGGCA ATGGGTCGGC ATTTTTCCGG AGCCCGCGGC GAGGCTCGTG
GCCATTGCCT ACAAGAACAG CCAACGGCTG GTGCGCCTGA TCAACGACAT CCTCGATATC
GAAAAACTCG GCGACGGTCG CGTGGTCTTC AATCTGTGTC GCGTCGACGT GCACGCCATT
GTGGAGCAGG CGATCGAGAG CAACCGCGGA TTTGCCGAAG GCTACGGCGT CAATGTCGGG
CTCACCACCG CATCGAGGAG CAGCGACGTC AACGCCGACC CGGATCGCCT CGCGCAGGTG
ATTACCAACC TTCTTTCGAA CGCGATCAAG GCCTCGCCTC CTGGTCGGGA CGTCCTTGTC
GCGGTCGAAC CACACGACGC GTTTGTCCGC ATTTCCGTTC GCGATCAGGG CGACGGAATT
CCAGCCACCT TCCGGCTGCA CATCTTCGAA AAATTCGCCC AGGCGGATGC GACCGACGCA
CGACAGAAAG GCGGTACCGG CCTCGGCCTC AGCATCGTCA AGCAGATCGT CGAACGGCTC
AATGGCCGGG TCAGCTTCGA AGACGCGGCC GGCGGCGGCA CGGTGTTCTG CGTCGATCTT
CCGGAATGGA AGATTCCGAT CGATGAACGG CCGTCGGTTC CAAAGTATCG AGTTCTGCAC
CTCGATGATG ATCCCAACAT TCTGGCGGCT GTCGCCCATG CCCTCAGCCC GGCAGCCCAG
GTGATATCGG TCGGGTCCCT CCAGGACGCA CGACGCATCT TGTCGGTCGA TCCGGTCGAC
ATGGTCCTGC TGGACATCTC GCTCGGCGAG CACTCCGGGC TGGAATTATT GGCTGATCTG
CACGACGCTG ACGGTGAAGC CATCCCGGTT ATCGTCTTTT GCACCAGCCC GATCGAACTG
ACACCCGACG GACAAGTGCA TGTGATCCTC GTCAAATCAC GGACCCCGCT GGATTCCTTG
CTGGCGTCGG TGCGGGACTG CCTGGCTCAT CGCGAACATC GCGAGGTGGC ATGA
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| Protein sequence | MPERLIADKL RTAEDARTQQ IGTGIELIAR RKDGSEFPIE IMLSPLDSPE GVLVTAAIRD
ISERKDAEKH LVQMEGRYQA LLEAAPDAMV VVNQTGEIVL LNLQAEKQFA YRRDELLGQK
VTNIIPEGFA ERLIADRLRS REDALAQHIG AGIELTGRRK DGSEFPIEIM LSPLESEGSI
LVTAAIREIS ARKHMERLRD EFVATVSHEL RTPLTSISGS LGLLVGQWVG IFPEPAARLV
AIAYKNSQRL VRLINDILDI EKLGDGRVVF NLCRVDVHAI VEQAIESNRG FAEGYGVNVG
LTTASRSSDV NADPDRLAQV ITNLLSNAIK ASPPGRDVLV AVEPHDAFVR ISVRDQGDGI
PATFRLHIFE KFAQADATDA RQKGGTGLGL SIVKQIVERL NGRVSFEDAA GGGTVFCVDL
PEWKIPIDER PSVPKYRVLH LDDDPNILAA VAHALSPAAQ VISVGSLQDA RRILSVDPVD
MVLLDISLGE HSGLELLADL HDADGEAIPV IVFCTSPIEL TPDGQVHVIL VKSRTPLDSL
LASVRDCLAH REHREVA
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