| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_4005 |
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| Symbol | |
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| ID | 3911812 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 4571884 |
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| End bp | 4573434 |
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| Gene Length | 1551 bp |
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| Protein Length | 516 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637885909 |
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| Product | FAD dependent oxidoreductase |
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| Protein accession | YP_487609 |
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| Protein GI | 86751113 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG1233] Phytoene dehydrogenase and related proteins |
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| TIGRFAM ID | [TIGR02734] phytoene desaturase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.665607 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 4 |
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| Fosmid unclonability p-value | 0.00234507 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGAGGGATC AGACCGCAAA GAATCGCGTG GTGGTGATCG GTGCCGGCGT GGCCGGACTG
ACCTCCGCTC TCGCCCTGTC GGCGCGCGGC CTCGACGTGA CCGTGGTCGA GCGCGCCGCG
ACGCCGGGCG GCAAGATCCG CGAGGTCGGC ATCGGCGCGG CGCGGATCGA CAGCGGCCCC
ACCGTCTTCA CCATGCGCTG GGTGTTCGAG GAATTGTTCG CCGCGGCCAA GCTGAACTTC
GCCGATCACG TCCGGCTGCG GCCGCTGTCG GTGCTGGCGC GCCATGCCTG GAACGAGGCC
ACGCGACTCG ATCTGTTCGC CGACGAGGCG CGCTCGGCGG ATGCGATCGG CGTGTTCGCC
GGCCCGGCCG AGGCGAAGCG CTACCGACAA TTCTGCGCCG ACAGCCGGCG GATCTATCAG
ATCCTAGAAC AACCGTTCCT GCGCGCCACC GCGCCGAGCC TGCCCAGCCT CGCCACCGCC
AACGGCCTCG GCGGGCTGCT GGAGTTGCGC AAGATCCGCC CGTTCACCAC GATGTGGAAC
GCGCTCGGCG ACTACTTCCG CGATCCACGC CTGCGGCAAT TGTTCGGGCG CTATTCGACT
TATTGCGGAT CCTCGCCGTT CCAGGCGCCG GCGACGCTGA TGCTGGTCGC GCATGTCGAG
CAGCAGGGCG TCTGGATCAT CGAGGGCGGC ATGCATGCGC TGGCGCGCGC GCTGGCCGAT
TGCGCGGCGT CGCAAGGCGC CAGCATTCGC TACGATCAGG AGGTGCGCGA GATCATGGTC
TCGGGCGGCC GCGCCGCCGG GGTGATTCTC GCCAGCGGCG AACGCATCGA AGCGCAATCG
GTGATCGTCA ACGCCGATGT CGGCGCCCTG CCCGGCGGCC TGTTCGGCGA CCAGGTGCAA
CGCGCCGTGC CGCCGCTGGC GCCGAAGCTG CGGTCGCTGT CGGCGATGAC CTGGAGTATG
GTGGCGAAGA CCGAGGGTTT TCCGCTCAGC CGGCATTCGG TGTTCTTCTC CCGCGACTAC
GCGCGCGAAT TCAACGATAT CTTCCAGCGC GGCGAAGTGC CGAGCGAGCC GACCGTCTAT
GTCTGCGGTC AGGACCGAAT CGACGACGAC GCGCGGCTCG GCGATGGCGG CGAGGAAGAA
CTGCTGGTGC TGATCAACGC GCCGCCTGTC GGCGATCGCA AACCGTTCGA TGAGGCCGAG
ATCGCGCGTT GCGCGGAGCG CACGTTCGAC GTGCTGGAAC GCTGCGGGTT GCGCATCCGG
CTTCAGCCTG ACAAAACCAC GGTGACCACG CCCGCCGATT TCAACCGGCT GTTTCCGGCG
ACCGGCGGGG CGCTGTACGG CCGCGCCTCG CACGGCTGGA CCGCCTCGTT CGAGCGCCCC
GGCGCACGGA CGAAAATCCC CGGCCTGTAT CTCGCCGGCG GCAGCACCCA TCCCGGCCCC
GGCGTGCCGA TGGCCGGCCT GTCCGGGCGC GCCGCCGCGG CGAGCCTCGT GGCCGACCTC
GAGGCCGAGC TGCAGGGCTT GAAGCCGATG CTGCGGCCGG CCGCCACCTG A
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| Protein sequence | MRDQTAKNRV VVIGAGVAGL TSALALSARG LDVTVVERAA TPGGKIREVG IGAARIDSGP
TVFTMRWVFE ELFAAAKLNF ADHVRLRPLS VLARHAWNEA TRLDLFADEA RSADAIGVFA
GPAEAKRYRQ FCADSRRIYQ ILEQPFLRAT APSLPSLATA NGLGGLLELR KIRPFTTMWN
ALGDYFRDPR LRQLFGRYST YCGSSPFQAP ATLMLVAHVE QQGVWIIEGG MHALARALAD
CAASQGASIR YDQEVREIMV SGGRAAGVIL ASGERIEAQS VIVNADVGAL PGGLFGDQVQ
RAVPPLAPKL RSLSAMTWSM VAKTEGFPLS RHSVFFSRDY AREFNDIFQR GEVPSEPTVY
VCGQDRIDDD ARLGDGGEEE LLVLINAPPV GDRKPFDEAE IARCAERTFD VLERCGLRIR
LQPDKTTVTT PADFNRLFPA TGGALYGRAS HGWTASFERP GARTKIPGLY LAGGSTHPGP
GVPMAGLSGR AAAASLVADL EAELQGLKPM LRPAAT
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