Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_3985 |
Symbol | |
ID | 3911792 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 4551395 |
End bp | 4553593 |
Gene Length | 2199 bp |
Protein Length | 732 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637885889 |
Product | putative PAS/PAC sensor protein |
Protein accession | YP_487589 |
Protein GI | 86751093 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4251] Bacteriophytochrome (light-regulated signal transduction histidine kinase) |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.525883 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.142655 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGACGGCTG AAGCGACGAT CTCCCCCGCA TTCGGAACCG CCGATCTTTC GAACTGCGAG CAGGAGCAAA TTCATCTTGC CGGTTCGATT CAGCCGCACG GCGCTCTGCT GGTGATCAGC GAGCCGGATC ACCGTATCGT TCAAGCCAGC GCCAACGCCG CCGAGTTCCT CAACGTCGAG CGGGTGCTCG GTCTGCCGCT CGCCGAACTC GAAGGCGATC TGCTGATCCG TATCCTGCCT CATCTCGACC CGACTTCCGA GGGAACGCCG ATCGCCGTGC GCTGCCGGAT CGGCAGCCCG GGGGCGGATT TCGACGGCTT GATCCATCGG CCGCTGGAAG GGGGGCTGAT CGTCGAGCTG GAGCGCGCCG GCCCGCCGGT CGATCTGTCG CTGATGGTCG GGCAGGCGCT GGACAAGATC CGGACCGCGA GCTCGGTTCG CGCCTTGTGC GAAGAAGCTG CGGTGCTGTT CCAGAATCGC ACCGGCTACG ACCGGGTGAT GATCTACCGT TTCGACGAAG AGGGCCACGG CGAGGTGTTC TCCGAGCGCC ACGTCCCGGG GCTCGAATCC TATCTCAGCA ACCGTTATCC GTCCTCCGAC ATTCCGCAAA TGGCGCGACG CTTGTACGAG CGAATTCGCG TGCGCGTGCT GGTCGACGTC GGCTACGAGC CGGTGCCCCT GCAGCCGCGG CTGTCACCTC TCACCGGGCG CGACCTCGAC ATGTCGAGCT GCTTTCTCCG CTCGATGTCG CCGATCCATC TGCAGTATCT GAAGAACATG GGCGTCCGCG CGACGCTGGT GGTGTCGCTG GTGGTCGGCG GCAAACTGTG GGGACTGGTC GCCTGCCATC ACTATCAGCC GCGCTTCATC CATTTCGAGC TGCGCGCCGT CTGCGAGCTG CTCGCCGAGG CGATCGCCAC GCGGATCACC GCACTCGAGA GCTTTGCGCA AAGCCAGTCC GAACTGTTCG TGCAGCGGCT CGAGCAACGC ATGATCGAAG CGATCTCGCG GGAGGGCGAC TGGCGCGCGG CGATCTTCGA CACGACGCAG TCGATCCTGC CGCCGGTCGG TGCGACTGGT GGCGCGCTGG TGTACGAGGG GCAGGTCACC ACGATCGGTG AAGTGCCAGG CACCCAGGAT ATTCGCGAGG TCGCCGCCTG GCTCAGCCGC CAGCCCCGCG TGTCGGTGAT CTCGACATCG TCGCTCGGTC TCGATGCGCC GGAATTCGCG CCGTTGACGC GCGTCGCGAG CGGCGTCGCG GCGGCGCCGG TCTCCAACCA TCCGGGCGAA TTCCTCATCT GGTTCCGTCC CGAGCGTGTG CGCACGGTGA CCTGGGGCGG CGATCCGAAA AAGCCTTTCG TGATCGGAGA TACGCCGGCT GATCTTTCCC CCCGGCGCTC GTTCGCCAAA TGGAATCAGG TGGTCGAAGG GACTTCCGAT CCGTGGACGC CGGCCGACCT GGCAGCGGTG CGGATGATCG GCCAGTCTGT CGCCGACATC GTCTTGCAGT TCCGCGCCGT ACGAACGCTG ATCGCCCAGG AGCAACTCGA CCAGTTCTCC CGTCAGGTGC TGACCTCCGA CCATCCGGTG GTGATCGCCG ACATCGAAGG CAAGATCCTG CTGATGAACG ACGCGTTCAC ATCGATGCTG CCGCAGGCGC ATCCGCCCGT CCAGCGACTG GACGATCTCG CCTCGGCCTT CGTCGAACCC TACGATTTCC TGCGGAATGT CGGCGAGCTG ATCAGTCGAC GGCGCGGCTG GCGGGGCGAA TTGCTGTTGC GCGGCGGGGG AAACGAGCCG CGTCCGTTGA TGGTGCGGGC CGACCCGGTG GTCCCGTCGC GCGATCGCGC GCTCGGCTTC GTGCTGATCT TCACCGACAA CACCGACCGC CGCGCTGCTG AAGCGGCGCG TGGCCGTTTC CAGGAAGGCA TCATCAAAAG CAGTCGGGTC GGCAGCGTGC GGTTGGATTC GAAATCCGAC CTCGTCTATC AGAATCTGTT GTCGTCGCTG GTCGAGAACG CCCAGCTCGC GGCGCTGGAG ATCACCTATG GGGTCGAGAC CGGGCGGATT GCCGAAATGC TCGAAGGCGT GCGCAATTCG ACGCTGCGCA CTGCGGAAGT CCTCGAGTAT TTGATGCTGC ACGCGTCCCG CACCAGCGGG AACGACAACA CGACAAGAAA CAACAAGTCC AACAGCTAG
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Protein sequence | MTAEATISPA FGTADLSNCE QEQIHLAGSI QPHGALLVIS EPDHRIVQAS ANAAEFLNVE RVLGLPLAEL EGDLLIRILP HLDPTSEGTP IAVRCRIGSP GADFDGLIHR PLEGGLIVEL ERAGPPVDLS LMVGQALDKI RTASSVRALC EEAAVLFQNR TGYDRVMIYR FDEEGHGEVF SERHVPGLES YLSNRYPSSD IPQMARRLYE RIRVRVLVDV GYEPVPLQPR LSPLTGRDLD MSSCFLRSMS PIHLQYLKNM GVRATLVVSL VVGGKLWGLV ACHHYQPRFI HFELRAVCEL LAEAIATRIT ALESFAQSQS ELFVQRLEQR MIEAISREGD WRAAIFDTTQ SILPPVGATG GALVYEGQVT TIGEVPGTQD IREVAAWLSR QPRVSVISTS SLGLDAPEFA PLTRVASGVA AAPVSNHPGE FLIWFRPERV RTVTWGGDPK KPFVIGDTPA DLSPRRSFAK WNQVVEGTSD PWTPADLAAV RMIGQSVADI VLQFRAVRTL IAQEQLDQFS RQVLTSDHPV VIADIEGKIL LMNDAFTSML PQAHPPVQRL DDLASAFVEP YDFLRNVGEL ISRRRGWRGE LLLRGGGNEP RPLMVRADPV VPSRDRALGF VLIFTDNTDR RAAEAARGRF QEGIIKSSRV GSVRLDSKSD LVYQNLLSSL VENAQLAALE ITYGVETGRI AEMLEGVRNS TLRTAEVLEY LMLHASRTSG NDNTTRNNKS NS
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