| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3965 |
|---|
| Symbol | |
|---|
| ID | 3911772 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 4526821 |
|---|
| End bp | 4530297 |
|---|
| Gene Length | 3477 bp |
|---|
| Protein Length | 1158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637885869 |
|---|
| Product | PAS/PAC sensor hybrid histidine kinase |
|---|
| Protein accession | YP_487569 |
|---|
| Protein GI | 86751073 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.342093 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGCCA AGGCGTCTTC CGGAATGTCC AAGTCGATCG CGGTGCTGCC GATCCAGGCC
GCCGCGGCGC GCGAGCGGGC CGCGCGGCGG AAGTGGTGGG GCGGCATGGT CACCGGGGTG
GTGGCCAGCC TGCTCCTGAG CGCCGTCATC GAATACGGGG TATCGCGAAA GAACGCCGCC
ACGGCGGAGC AGAAATTCGA GAGTCTCGCC TCGGACTTCA TCTATCGGCT CAAGGAGCGC
GTCGGCACTT ATCGCTTCGA GCTGCTGGCG GCGCGCGGCG TCATCGCCGT TGCCGGCGAA
GCGATCAGTT TCGACACCTT CCACCGATAC GCTGAGACGC GCAACTTCAT CAGCGAGTTT
CCCGGCGCGC GCGGCTTCGG CTTCGTCCGT CCGGTCGCAC CGCAGGACGT GGAGGCGTTC
GTGGCGCGGA TGCGCGCGAA CGGGCTGCCC ACCTACGGGG TGAAACAGCT GGCTCCTCAC
GAGGGGGTCC GTTACCTCGT GACGTATCTC GAGCCCCACG ATCTCAACGG CACCGCGCTC
GGTATCGACC TGGCATCGGA GGCGAAGCGC AAGACCGCAG CGGATGCGGC CGCTGCGAGC
GGCCAGGCGA CGATGACTGC GCCGATCGAG CTCCTGCCGA TCAGCGGCAT GGATCGCGGG
TTCCTGGTTC TGCTGCCGGT GTATCGCAGC GGTGATCCGG TGACGACCGA AGAGCAGCGG
CGACGCGCAT TGGTCGGCTG GACCTTCACC CCGGTCGACA TCTACGCGAT CCTGGCCGAA
CTCGACAGCG GCGCCGGCGA GTTCGGCTTT TCGGTGAGCG ACGATGGCGG AGCGCCGTTC
CATACGGTCG GCGCGCCTCG GGATTCGAGC CTGTCGCTGC CGACACGAGA TATTTCGTTC
GGAATGTACG GCCGCACCTG GAAAATCGCC TTTTGGGCTC TGCCGCCGTT CATCGAGTCG
TTGAGTCTGC CGAATCCGTG GCTCCCTTTC GCAATGACGT TGGCGATCGG TCTGCTGGTC
ACTGCACTCG TCAACTTGCA GATGTTCTAT CAGGCCCGGC GCGCCGAGCA GACGATCGAG
CGCTCGCGGC TGGCAGCGAT CGTCGAAGGC TCGAACGACG CGATCCTCGC CAAGTCGGTC
GACGGCATCG TGATCGATTG GAACAAGGCG GCGGAACGGT TGTTCGGCTA CAGTTCCCAC
GAAGCGGTCG GCAGCAAGGT CTACGATCTC ATCGTTCCGG AAGATCGCCG AGAAGAGGAA
CTGCGGATGC TGGAGCGCAT GCGCCACGGC GATCCGATGA CGTATTTTCG GACCCGTCGC
ATCAGGCGTG ACGGCAGCCT GGTCGACGTC GCTATCAGCC TCTCGCCGAT TCGCTCCGAA
GTCGGCGCGC TGATCGGCAT CGCCTCGGCG GCGCGCGATA TCACCGAGCT TGTGGCCGCG
GAGAAACAGA TCCGCGAGCT CAACGCCTCG CTGGAGCGAC AGGTTGCCGA CCGGACCGCA
ATGCTCGAGA AGAGCATGAC GCTGCAGACC GCCATCCTCG AACGCGCCGC CTATGCCGTG
ATCGCTACGA ACGTCGACGG CACGATCACC TTGTTCAACC CGGCGGCTGA ACGCATGCTC
GGGTACAAGG CCGAGGAGTT GATCGGTCGT GCGACGGCAA TGCTGTTTCA TGATCCGCAG
GAACTGCTGG ACAGGGCCGA TGCGATGCGG AGGCAGGGCA TCGAGGTCGG GTCGGGTCAA
CGCGTCGTTC AAGCGCTGCT CGCCCACAAC GATCCGGACA CGTCGCTGTG GACCTATGTC
GGCAAGACCG GGAACCGCAT TCCGGTTCGG TTGACGCTCT GCCGCCTGCG AACGAAGGAC
GGCACCGATC TCGGCGTTCT CGGGATTGCG GTCGATCTGA CCGAACAGCT CAAATACGAG
GACGAGCTCA AAGCCGCGCG GGCGAGCGCC GAACAGGCCG GTGCCGCGAA GGCGGATTTT
CTCGCCAATA TGAGCCACGA AATCCGGACG CCGCTCAACG GCATCATCGG CTACGCCGAT
CTCGCTCTCG AAGACCAGAC GCTCGTACCG ACGACTCGCC GCCAGGTGGA GCGCATCTTC
GAAGCCAGCG ACTCGCTCCG GGTGATCATC GACGACATTC TCGATTTTTC CAAGATCGAG
GCCTGCGGCC TCAAGCTGGA AAGCAAGCCG CTCTACCTCA CTGAGCTGAT CGACAATTGC
GTGTCGATCA TTCAACCCAA GGCCGAAGAG AAAGGCCTGA AGCTGCTCGC GACCGCGCGC
GACACTCCGG CCGTGTTGAT GGGCGATGCC GCGCGTCTGC GGCAAGTCCT GCTGAATTTG
ATGAACAATG CCGTCAAGTT CACCTCGGCC GGCTCGGTCG AATTGATCGT CTCCTGCGTG
TCGCGCGCCG ACCCCATGGT TCGCCTGCGG ATCGCTGTGG TCGACACCGG CATCGGCATC
TCCAAGGTTG ATCAGCAAGG ATTGTTCAAG CGTTTCAGTC AAGCCGATGA AACGATCTCG
CGCAAATATG GTGGCACCGG TCTCGGACTC GCGATTTCGC AGCGCATCGT GCAGGCGATG
CAGAGTGAGT TGAAGATCGA CAGCGATCAA GGACGAGGCA GCACGTTCTA TTTCGAGGTC
GAATTGCCGA TCGCCGAGCG GATCGACATC GAAGGGCGTG AAAGCCCGGT GCTGAACGGG
CCGAGACGAA GAATCCTGGT GGTGGACGAC GTGGAGATGA ATCGCGACCT GTGCAAGTCC
ATGCTCGGTC GCATCGGCCA CGAGGTGGAT CTGGCGGACA GCGGCAGCAC GGCGATCGCG
ATGGCGTGCG CCCGCTCCTA CGACCTGATC TTCATGGACG TGCAGATGGG CGAGATGGAT
GGGATGGAGG CGACGCGTCG CATCCGGACC TTGCGCGGCA GCGCCTGTAC CGTGCCGATC
ATCGCGCTGA CGGCGAACGT GCTTCCAAAA CAGGTCGAGC GCTACAAGGC GGCCGGCATG
GACGACCATA TCGGCAAGCC GATCAATCGC GTGGCCCTTC TCACGTGCGT TGCGAGATGG
ACCGACGACG GGGCCGATCG TAAGTCCGGC CAGGATTTCG CGCCGCCAAC CGCTCGCGAT
GAGATGCCGG TGCGCGATCC GACCGCGCTG GAAGACCTGA GAACGTTCGC GGCCGATGTC
GACATCGCCG GATTCACCCG GCGCCTCTAC GACGCCGTGA CGGACATGCG GACGCGCTGG
CCGGCAGGCA CCGGAGCGTC TGATCTCGAC GAAGACCCGC GCGAAGCACT ACGCCTCACA
GCCCACAAGA CCGTCTCGCT CGCGGGACAA CTCGGCTTCG TCCAACTCGC GGAAGCCTGT
CGCAGAATGG AGAACGCGTG CCTTGGCAAT GCGGGCCTGC CGGAGGCGCT GGATGACTTG
CACGCCGCGA TCGCCTCGGC GGAGCCCGAG TTGGGCGCCC TGAGCGATGT GGCCTGA
|
|---|
| Protein sequence | MLAKASSGMS KSIAVLPIQA AAARERAARR KWWGGMVTGV VASLLLSAVI EYGVSRKNAA
TAEQKFESLA SDFIYRLKER VGTYRFELLA ARGVIAVAGE AISFDTFHRY AETRNFISEF
PGARGFGFVR PVAPQDVEAF VARMRANGLP TYGVKQLAPH EGVRYLVTYL EPHDLNGTAL
GIDLASEAKR KTAADAAAAS GQATMTAPIE LLPISGMDRG FLVLLPVYRS GDPVTTEEQR
RRALVGWTFT PVDIYAILAE LDSGAGEFGF SVSDDGGAPF HTVGAPRDSS LSLPTRDISF
GMYGRTWKIA FWALPPFIES LSLPNPWLPF AMTLAIGLLV TALVNLQMFY QARRAEQTIE
RSRLAAIVEG SNDAILAKSV DGIVIDWNKA AERLFGYSSH EAVGSKVYDL IVPEDRREEE
LRMLERMRHG DPMTYFRTRR IRRDGSLVDV AISLSPIRSE VGALIGIASA ARDITELVAA
EKQIRELNAS LERQVADRTA MLEKSMTLQT AILERAAYAV IATNVDGTIT LFNPAAERML
GYKAEELIGR ATAMLFHDPQ ELLDRADAMR RQGIEVGSGQ RVVQALLAHN DPDTSLWTYV
GKTGNRIPVR LTLCRLRTKD GTDLGVLGIA VDLTEQLKYE DELKAARASA EQAGAAKADF
LANMSHEIRT PLNGIIGYAD LALEDQTLVP TTRRQVERIF EASDSLRVII DDILDFSKIE
ACGLKLESKP LYLTELIDNC VSIIQPKAEE KGLKLLATAR DTPAVLMGDA ARLRQVLLNL
MNNAVKFTSA GSVELIVSCV SRADPMVRLR IAVVDTGIGI SKVDQQGLFK RFSQADETIS
RKYGGTGLGL AISQRIVQAM QSELKIDSDQ GRGSTFYFEV ELPIAERIDI EGRESPVLNG
PRRRILVVDD VEMNRDLCKS MLGRIGHEVD LADSGSTAIA MACARSYDLI FMDVQMGEMD
GMEATRRIRT LRGSACTVPI IALTANVLPK QVERYKAAGM DDHIGKPINR VALLTCVARW
TDDGADRKSG QDFAPPTARD EMPVRDPTAL EDLRTFAADV DIAGFTRRLY DAVTDMRTRW
PAGTGASDLD EDPREALRLT AHKTVSLAGQ LGFVQLAEAC RRMENACLGN AGLPEALDDL
HAAIASAEPE LGALSDVA
|
|---|
| |