Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_3920 |
Symbol | |
ID | 3911725 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 4471129 |
End bp | 4473933 |
Gene Length | 2805 bp |
Protein Length | 934 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637885822 |
Product | CheA-like signal transduction histidine kinase |
Protein accession | YP_487524 |
Protein GI | 86751028 |
COG category | [N] Cell motility [T] Signal transduction mechanisms |
COG ID | [COG0643] Chemotaxis protein histidine kinase and related kinases [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.690282 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGACGATC TTCTCCGTGA GTTCTTGACG GAAACCTTCG AAAGCCTGGA TACGGTTGAC AATCAACTGG TCCGCTTCGA GCAGGAGCCG AACAACGCGA AGATACTGGA TAATATCTTC CGGCTCGTTC ACACCATCAA GGGTACCTGC GGGTTCCTCG GGCTGCCGCG ACTGGAAGCG CTGGCGCATG CGGCCGAGAC GTTGATGGGC AAATTCCGCG ACGGCATGCC GGTCACCGGC GAGGCGGTGA CGCTGATCCT GACCACGATC GACCGCATCA AGGACATTCT CGGCGGACTG GAAGCGACCG AGGCCGAGCC CGAGGGCGAC GACGGCGACC TGATCGGCGA ACTCGAACGG CTGTCGATGC GCACGCCGGA GCAGATCGCC GCCGAGCTCG GCGGCAGCGC TGCGCCGGTC GACGAAGCCG TTCCGGAGGA CGCTGCGCCG GTCGAAGCGG CCGTGGCCGC ACCGGCGGTG GCAGAAGGTT CGCTGGTGCC GCAGACGCTG GAGCGTCCGT TGCGCCCGGG CGAAGTGTCG CTCGACGAGC TGGAGCGCGC GTTCCAGGAA ACCGCGATCG AAGTGGCCTC GCCGCCGCTG GCGCCGGTCG CGAGCGAGCC GGAGAAGCCG GCCGAGGCTC CGCCTGCGGT CGTCGAAGCA GCCAAGCCGG CGCCGAAGCC GGCCGCCAAG GCCCCGAAGA AGAATGCCGA CGCCGAGGCT CCGGCCGAGG GCGACCGGAT CGCCAACCAG TCGATCCGCG TCAACGTCGA CACGCTCGAA CACCTGATGA CGATGGTGTC GGAGCTGGTG CTGACCCGCA ACCAGCTGCT CGAGATCAGC CGTCGCCACG AGGACACCGA ATTCAAGGTG CCGCTGCAGC GGCTCTCGAC CGTCACCGCC GAGTTGCAGG ACGGCGTGAT GAAGACCCGG ATGCAGCCGA TCGGCAACGC CTGGCAGAAG CTGCCGCGGA TCGTGCGCGA TCTCGCCGCC GAACTCGGCA AGCAGATCGA ACTCGAGATG CACGGCGCCG ATACCGAACT CGACCGCCAG GTCCTCGACC TGATCAAGGA TCCGCTCACC CACATGGTGC GCAACTCCGC CGATCACGGT CTGGAGCGGC CGGAGGAGCG GGTGCGCAAC GGCAAGCCCG AGCAGGGCAC GATCCGTCTG TCCGCCTATC ACGAAGGCGG CCATATCGTG ATCTGCATCG CCGACAACGG CCGCGGCCTC AACACCGAGC GGATCAAGGC GAAGGCGATC GCCAACGGCC TGGTCACCGA GGCCGAGGTC GAGAAGATGA CCGAGGCGCA GATCCACAAG TTCATCTTCG CGCCCGGGTT CTCGACCGCC GCCGAAGTCA CCAGCGTGTC CGGCCGCGGC GTCGGCATGG ACGTGGTGCG TACCAATATC GACCAGATCG GCGGCACCAT CGAGATCAAG TCGGTGGCCG ACGAAGGCTC CAGCGTCACC ATCAAGATCC CGCTGACGCT GGCGATCGTC TCGGCGCTGA TCGTCGAGGC CGGCGGCGAT CGCTTCGCGA TCCCGCAGCT CGCGGTGGTC GAACTGGTGC GGGCGCGGGC CAATTCCGAG CACCGCATCG AGCGTATCAA GGACACTCCG GTGCTGCGTC TGCGCGACAA GCTGCTGCCG CTGATGCACC TGAAGAAGCT GCTGCACATC GACGACGGCA CCGCCTCGAC CGAGCCGGAG AACGGCTTCA TCGTGGTGAC CCAGGTCGGC AGCCAGACCT TCGGCATCGT CGTCGACGGC GTGTTCCACA CCGAGGAAAT CGTCGTCAAG CCGATGTCGA CCAAGCTGCG CCACATCGGC ATGTTCTCGG GCAACACCAT CCTGGGCGAC GGCGCGGTGA TCATGATCGT CGATCCGAAC GGGATCGCGC AGGCGCTCGG CACCTCGGTG TCGGCGCAGC ACGACCTGGC GGAGCAGAGC GCGGCGACCC GCGCGGCCAC GACCGAGCAG CTCACCTCGC TGCTGGTGTT CCGCTCCGGC TCGCCGCAGC CGAAGGCGGT GCCGCTGTCG CTGGTCACCC GGCTCGAAGA GATCGCCGCC GACAAGATCG AATCGTCGAA CGGCCGCTAC ATGGTGCAGT ACCGCGATCA ACTGATGCCG CTGGTGCTGA TGGAGGGCGT CGAGGTCGCG AGCACGGGTG TGCAGCCGAT CCTGGTGTTC GCCGACGAAG ATCGCAGCAT GGGTCTCGTG GTCGACGAGA TCGTCGACAT CGTCGAGGAG CATCTGCAGA TTCAGGTCGG CTCCAGCCGC GACGGCATTC TCGGCTCGGC GGTGATCAAG GGGCTCGCCA CCGAAGTCAT CGACGTCGCT CACTTCCTGC CGATGGCGTT CTCCGACTGG CTCTCCCGCA AGGAGATGAA GCAGTCGATC GCCAGCCGGT CGGTGCTCCT GGTCGACGAC TCCGCGTTCT TCCGCAACAT GCTCGGCCCG GTGCTGAAGG CAGCCGGCTA CAAGGTGCGG CTGGCGACTT CGGCGGTCGA AGGACTCTCG GTGCTGCGTA GCGGCGCCAG CTTCGACGTG ATCCTGACCG ACATCGAGAT GCCGGAAATG AACGGCTTCG AGTTCGCCGA GGCGATCCGC GCCGACACGA AACTGGCGCC GACGCCGGTG ATCGCGCTGT CCTCGCTGGT GTCGCCGGCG GCGATCGAGC GCGGACGCCA GGCCGGCCTC ACCGACTACG TCGCCAAATT CGATCGTCCC GGCCTGATTG CGGCGCTGAA GGAGCAAACC GCGAGCACCG AGCGGGTCGA GGCATTGCAG CAGCAGGCGG CATGA
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Protein sequence | MDDLLREFLT ETFESLDTVD NQLVRFEQEP NNAKILDNIF RLVHTIKGTC GFLGLPRLEA LAHAAETLMG KFRDGMPVTG EAVTLILTTI DRIKDILGGL EATEAEPEGD DGDLIGELER LSMRTPEQIA AELGGSAAPV DEAVPEDAAP VEAAVAAPAV AEGSLVPQTL ERPLRPGEVS LDELERAFQE TAIEVASPPL APVASEPEKP AEAPPAVVEA AKPAPKPAAK APKKNADAEA PAEGDRIANQ SIRVNVDTLE HLMTMVSELV LTRNQLLEIS RRHEDTEFKV PLQRLSTVTA ELQDGVMKTR MQPIGNAWQK LPRIVRDLAA ELGKQIELEM HGADTELDRQ VLDLIKDPLT HMVRNSADHG LERPEERVRN GKPEQGTIRL SAYHEGGHIV ICIADNGRGL NTERIKAKAI ANGLVTEAEV EKMTEAQIHK FIFAPGFSTA AEVTSVSGRG VGMDVVRTNI DQIGGTIEIK SVADEGSSVT IKIPLTLAIV SALIVEAGGD RFAIPQLAVV ELVRARANSE HRIERIKDTP VLRLRDKLLP LMHLKKLLHI DDGTASTEPE NGFIVVTQVG SQTFGIVVDG VFHTEEIVVK PMSTKLRHIG MFSGNTILGD GAVIMIVDPN GIAQALGTSV SAQHDLAEQS AATRAATTEQ LTSLLVFRSG SPQPKAVPLS LVTRLEEIAA DKIESSNGRY MVQYRDQLMP LVLMEGVEVA STGVQPILVF ADEDRSMGLV VDEIVDIVEE HLQIQVGSSR DGILGSAVIK GLATEVIDVA HFLPMAFSDW LSRKEMKQSI ASRSVLLVDD SAFFRNMLGP VLKAAGYKVR LATSAVEGLS VLRSGASFDV ILTDIEMPEM NGFEFAEAIR ADTKLAPTPV IALSSLVSPA AIERGRQAGL TDYVAKFDRP GLIAALKEQT ASTERVEALQ QQAA
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