| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3883 |
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| Symbol | |
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| ID | 3911687 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 4437635 |
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| End bp | 4438909 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637885784 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_487487 |
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| Protein GI | 86750991 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.135938 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGCACA AAGTCGATCC GTCGGGCGAC CTGACGCTGC AGTCGCGGCC GCCTGTGGTC
GTCCGCTGGG CGGGCGCGGT CTGGCGCTAC AAATGGGCGG TGCTCGGTAT CGGGCTGGTG
CTGATCGCGG CGGGGCTCGG GCTGGCCCGG CTGATGCTCG GCCCGAAGGT CGTCGCCGTC
GTCGTCGCGC GCGCCGATCT GGTGCAGAGC GTGGTCGCCT CCGGCCATAT CGAGACGCCG
TACCGGGTCG AGATCGGCAG CCAGATCACC GGCACCGTCG CCGACGTGCT GGTGCGCGAG
GGCGAGGTGG TTCGCGAAGG CCAGAAGCTG ATCGCGATCG AGGCCAGCGA GCTGGAAGCC
GCGGTGGTCC AGGCCGAGGG CGCGGTGCAG CAGGCCGAGG CGCGGGTGCG TCAGCTCCGT
GAACTCACCA AGCCGGCCGC CGATCAGTCG CTGCAGCAGG CGCAGGCCAA TCTGCTCAAC
GCCGAGGCGG CGTATGAACG CGCTTCCAAG CTCGCGGCCG GCGGCTTCGG CACCCGCGCC
ACGCTGGACG ACGCCACCAG AAATCTGAAC GTCGCGCGCA CCCAGGTGCG GACCGCCGAG
TTGCAGGTCT ATACGTCCAG TCCGGTCGGC AGCGATTTCG TGATGGCGGA GACCCAGCTG
GCGCAGGCCC GCGCCACGCT CAACACCACG CAGGCCCGGC TCGGCTATGC CAGCATTACT
GCGCCACGCG ACGGCGTGCT GATCACCCGC AAGGTCGAGC GCGGCAGCGT GGTGCAGCCC
GGCAAGGCGC TGCTGGTGCT GGCGCCGGCC GGCGACAGCC AGATCGTGGT GCAGATCGAC
GAGAAGAATC TCGGCCAGCT CGCGCTCGGC CAGCACGCGC TGGCCTCGGC CGACGCCTAT
CCGGACAAGC GCTTCGCGGC AAGGCTCAGC TACATCAACC CGTCGGTCGA CATCAACCGC
GCGTCGGTCG AGATCAAGCT CGCGGTGATC GATCCGCCGG ACTATCTGCG CCAGGACATG
ACGGTGTCGG TCGACATCGC CACCGCGCGC CGTGACAATG CGGTGGTCGT CCCGGCGCGC
GCGGTCAATG ATGCGACGAC GGTGCCCTAT GTGCTGAAGG TGGCGGGCGG CCGCGCGGTG
CGGCAGCCGG TCAAGCTGGG TCTCCGCGGC GTCGGCGCCT ACGAAGTGAT CGAGGGGCTT
TCGCCGGGCG ACCGGGTGAT TCCGCTCGCC ACCGGCGTCG TGCCCGACCA GCGCGTCCGC
GTGGTCGCGC CGTGA
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| Protein sequence | MLHKVDPSGD LTLQSRPPVV VRWAGAVWRY KWAVLGIGLV LIAAGLGLAR LMLGPKVVAV
VVARADLVQS VVASGHIETP YRVEIGSQIT GTVADVLVRE GEVVREGQKL IAIEASELEA
AVVQAEGAVQ QAEARVRQLR ELTKPAADQS LQQAQANLLN AEAAYERASK LAAGGFGTRA
TLDDATRNLN VARTQVRTAE LQVYTSSPVG SDFVMAETQL AQARATLNTT QARLGYASIT
APRDGVLITR KVERGSVVQP GKALLVLAPA GDSQIVVQID EKNLGQLALG QHALASADAY
PDKRFAARLS YINPSVDINR ASVEIKLAVI DPPDYLRQDM TVSVDIATAR RDNAVVVPAR
AVNDATTVPY VLKVAGGRAV RQPVKLGLRG VGAYEVIEGL SPGDRVIPLA TGVVPDQRVR
VVAP
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