Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_3874 |
Symbol | |
ID | 3911678 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | + |
Start bp | 4429091 |
End bp | 4430302 |
Gene Length | 1212 bp |
Protein Length | 403 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637885775 |
Product | diguanylate cyclase |
Protein accession | YP_487478 |
Protein GI | 86750982 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2199] FOG: GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTTGAGCG TCCCGACACT CTGGGTGGTC TTTCTGATCA ACTTCCTCGC GCTGGGTCTG GTCTGGACCC ACGTGATGCG GAGCTATCCG AACTTCACAC CGGCGCGCTA CTGGACCGCG GCCTGCTTTG TGGTTTCACT CGGCGCGGGC TTCGGGATGC TGCGGGGCGT GATGGACACC AAGGTGCCCC TCATCGTCGG CGGCAGCACC GTCGTTCTGG CCGCCTATCT GATCGCAATG GGCGTCTTCT GCTTTTACGG CCGGCACATG AGCTGGCGGC TCGCCCTCGG CGCGACCGCA GCCTGCAGCG CGGGTCTCGG CTTCTTCCTG CTCGTGATCG ATTCGATGAT GATGCGGATC CTGATCTATT CGGTGGCCCA GGCGGTCCCG ATCGCGATGA CGTTGCCACT GATGCTGTCG CGCAGCGGCC GCCGCAATCC CGGCGCGCGG ATGGCCGCAG CGGTGGCGAT CGCGATGCTG CTGGTCTACG CGGTCCGCTC CGGGGCTGCG ATCATCGGCG TCGGCGGCGA ATTGTCGGTG GTCAATTTCA ATGACTTTCA GGCTTCGCTG GTGCTGATGC TGGTGTTCCT GTCGATGACG CTGAACTTCT CGTTCCTGCT GATGGCGATC GACCGGCTGC GCTCCGAAGT CGAGAGCCTC GCGCTGATCG ACGACCTCAC CGGCATCGCC AACCGCCGCC ATTTGCTGCA GCGGATGGTG GCGCAGTGTC GGACCGCGAT GCAGACCGGC GAGCCGTTCA CGGTGCTGGC GATCGACCTC GACGGCTTCA AGGCGATCAA TGACGGCCAC GGTCACGCCG CCGGCGACGA GTGCCTGCGC CGGTTCTCCG GCGCCGCGCA GGCGCGGCTG CGTCCCGGCG ACCTGTTTGC GCGCACCGGT GGCGACGAGT TCTGCGTGGT GATGCCGGCG ACCACCCTGC GCGAAGGCGC GATGGTCGCC CGCCACATCC TCGAAGAAAG CCGCGCGCTC TCGACCCAAG GCGGCGATGC GGCCAGCGCC ATCGCCATCG CCGCTTCGAT CGGCGTCGCG CAGTGGACGC CGCAGGTCGG ATTGCATCCC GACCGGCTGA TCGCGGCCGC GGACGCCGCG CTGTACAACG CCAAGAAACT CGGCAAGGAT CGCTACGCGA TCCACGAGCC GAAGCTGGAA CCGCTGCCTC CGTTCCTCGA GCCGGTGCGC AAGATCGCCT GA
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Protein sequence | MLSVPTLWVV FLINFLALGL VWTHVMRSYP NFTPARYWTA ACFVVSLGAG FGMLRGVMDT KVPLIVGGST VVLAAYLIAM GVFCFYGRHM SWRLALGATA ACSAGLGFFL LVIDSMMMRI LIYSVAQAVP IAMTLPLMLS RSGRRNPGAR MAAAVAIAML LVYAVRSGAA IIGVGGELSV VNFNDFQASL VLMLVFLSMT LNFSFLLMAI DRLRSEVESL ALIDDLTGIA NRRHLLQRMV AQCRTAMQTG EPFTVLAIDL DGFKAINDGH GHAAGDECLR RFSGAAQARL RPGDLFARTG GDEFCVVMPA TTLREGAMVA RHILEESRAL STQGGDAASA IAIAASIGVA QWTPQVGLHP DRLIAAADAA LYNAKKLGKD RYAIHEPKLE PLPPFLEPVR KIA
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