Gene RPB_3863 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_3863 
Symbol 
ID3911667 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp4417756 
End bp4419498 
Gene Length1743 bp 
Protein Length580 aa 
Translation table11 
GC content61% 
IMG OID637885764 
Productmagnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase 
Protein accessionYP_487467 
Protein GI86750971 
COG category[C] Energy production and conversion 
COG ID[COG1032] Fe-S oxidoreductase 
TIGRFAM ID[TIGR02026] magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0582854 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.393497 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTGTCACT GTTTCTTGAC AATTATGGGA GAAATGTCAG TGCGCATCCT TCTGATTCAC 
CCGAATTATC ATTCCGGTGG TGCCGAGATC GCCGGCAACT GGCCGCCGGC ATGGGCCCCC
TATCTCGCGG GCGCGCTGAA GGCCAACGGG TTCACCGACA TCAAGTTCAT CGATGCGATG
ACCGAGGATA CGTCGGACGA ACAGCTGGCC AAGATCGTCG CCGACTACCA GCCCGATCTG
GTCGGCGCGA CCTCGATCAC GCCGTCGATC TACAAGGCCG AGGAGGCCCT GAAGGTCGTC
AAGCAGGTGA ACCCCAAGAT CGTCACCATG CTCGGCGGCG TGCACGCGAC CTTCATGTAT
CAGCAGGTGC TGACTGAAGC GCCGTGGGTG GACGTGATCG TGCGCGGCGA AGGCGAGGAG
ATCGTCGTCG AACTCGCGCG GGCCGTCGCC TCCGGCAACT GGCCGGCCAA TCGCGATGCG
ATCAAGGGCC TGGCCTACAC CGAGGGCATG AACGGCGAGA GCAAGATCGT CGCGACGCCG
GCGGCGCCGA CGGTGAAGGA TCTCGACGCC ATCAGCCCGG ACTGGGGCAT CCTCGACTGG
ACGCTCTACA AGTACATCCC GATGAACACC CGGGTCGCGA TCCCCAACAT GGCGCGCGGC
TGTCCGTTCA CCTGTTCGTT CTGCTCGCAG TGGAAGTTCT GGCGCGACTA TCGCGTCCGC
GATCCGAAGA AGGTGGTCGA CGAAATCCAG GAACTGGTCG AAAAATACCA GGTCGGCTTC
TTCATCCTCG CCGACGAAGA ACCCACCATC AACCGCAAGA AGTTCATCCA GTTCTGCGAA
GAGCTGATCG CCCGCGGCCT GAACAAGAAG GTGCAGTGGG GCATCAACAC CCGCGTCACC
GACATCCTGC GCGACGAGCA GCTTCTGAAG TTCTACAACG AAGCCGGCCT GATGCACGTG
TCGCTCGGTA CCGAGGCGGC GGCGCAGCTC AAGCTCGACC TGTTCAACAA GGAAACCAAG
ATCGCCGACA ACAAGAAGGC GATCCGGCTG CTGCGTGAAG CGGGCATCGT CACCGAGGCG
CAGTTCATCG TCGGCCTCGA CTCCGAGACT CCGGAGACGC TGGAAGAAAC CTATCGCATG
GCGATGGACT GGAAGCCGGA TCTGGCCAAC TGGTCGATGT ATACGCCCTG GCCGTTCACG
CCGCTGTTCA AGGAACTGAG CGACAAGGTC GAAGTGTTCG ACTTCGACAA GTACAATTTC
GTCACGCCGA TCGTGAAGCC GGCGGCGATG GAACGCGGCG AACTGCTCGA CCGGGTGATG
AACAATTATC GCCGGTTCTA CATGTACAAG GCGTTCTTCT CCTACCCGTG GTCGGGCAGC
GGGCGGCGCC GTCGCTATCT GCTGGGCTGC CTCAAGGCGT TCCTGAAGGC CGGCTTCGAA
CGCAAATTCT ACGACCTCGG CCGGGTCGGC TATTGGGGTC CGCAGTCGAA GAAGAAGGTC
GACTTCCACT TCGACACCAC CCGCAAGATC TCGCACGCGC AGATGGCCGA CTGGGAAGCC
AACGCGGATC GTTCGCGCAA GTCGGCAGCC TCCCAGATGG CCATCGTCTC GGCCTGCGGC
GGCGGCTCCG AACAGATGTC GGAACCGATC AGTTGCGAAG GCGCCAAGGA GAAATTGGCG
GAGACCGTTA CCAGCCGCAT GGTGGACAAC GCCAATGAAG CAGGTTCGCT CACCCGCCAC
TGA
 
Protein sequence
MCHCFLTIMG EMSVRILLIH PNYHSGGAEI AGNWPPAWAP YLAGALKANG FTDIKFIDAM 
TEDTSDEQLA KIVADYQPDL VGATSITPSI YKAEEALKVV KQVNPKIVTM LGGVHATFMY
QQVLTEAPWV DVIVRGEGEE IVVELARAVA SGNWPANRDA IKGLAYTEGM NGESKIVATP
AAPTVKDLDA ISPDWGILDW TLYKYIPMNT RVAIPNMARG CPFTCSFCSQ WKFWRDYRVR
DPKKVVDEIQ ELVEKYQVGF FILADEEPTI NRKKFIQFCE ELIARGLNKK VQWGINTRVT
DILRDEQLLK FYNEAGLMHV SLGTEAAAQL KLDLFNKETK IADNKKAIRL LREAGIVTEA
QFIVGLDSET PETLEETYRM AMDWKPDLAN WSMYTPWPFT PLFKELSDKV EVFDFDKYNF
VTPIVKPAAM ERGELLDRVM NNYRRFYMYK AFFSYPWSGS GRRRRYLLGC LKAFLKAGFE
RKFYDLGRVG YWGPQSKKKV DFHFDTTRKI SHAQMADWEA NADRSRKSAA SQMAIVSACG
GGSEQMSEPI SCEGAKEKLA ETVTSRMVDN ANEAGSLTRH