| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3853 |
|---|
| Symbol | |
|---|
| ID | 3911657 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 4407381 |
|---|
| End bp | 4408634 |
|---|
| Gene Length | 1254 bp |
|---|
| Protein Length | 417 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637885754 |
|---|
| Product | response regulator receiver modulated diguanylate phosphodiesterase |
|---|
| Protein accession | YP_487457 |
|---|
| Protein GI | 86750961 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2200] FOG: EAL domain
[COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.548821 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGATT CGACCGATCA AGCGCAGGCC GCACGCATCC TCGTCGTCGA CGACGACCCG
GTGCAGGGTG CCATCATCAG CGGCGTGTGT CGACGACGCG GCTATCGACC AACCTTCGCA
TCGTCGTATC AGGCAGCGGT CGATCAGATC GCCGCGGGCG ACTTCGAGTG TATCACCATC
GATCTTTCGC TCGGTGATCG CGACGGAATC GAATTGCTGC GTCTGATCGC CGGCGGCGGC
AGGTCGCCGC GCGTGATCGT GATCAGCGGT TGCGACCAGC GGATCCTCAG CGCGACGGTC
AGAATGGCGC ACGCGGTCGG AGTCGTCGAT GCGGTGTCGC TGCAGAAGCC GATCGATCTG
GCCTCGCTCG GCGACGCGCT GAGCTTCGGC GCCGGTGAAC AGCCGTCGTT GCGGCATCGG
CCCGATCGGC AATCACGTCC GGTCACGGCA GCCGATCTGT CGCGGGGCCT CGAGACCGGC
GAGCTCTATC CGGCGTTTCA GCCGAAGGTG AATCTCGCGA CCGGACGGGT GGTCGGTTGT
GAAGCGCTGG CGCGATGGGA CAGTCCGACC TTCGGCTCGG TCGGCCCCGA TGTGTTCATC
CCGCTCGCCG AACAGAGCGG GCTGATCAAG CCGCTCACGC TGCTGATGCT CCGGCAGTCG
ATCGAGCTCG CGCGCTATTT CTTCGACATC GATCCCTCGT TCTCGGTGGC CGTCAATCTG
TCGGCGGCGC TGCTGTCGGA TACGACCATC CCCGAAGAGG TCGAGCGATT GCTCGATGGG
ACCGGTCTGC CGGCGCGCTC GCTGATCATC GAGGTCACCG AGTCCACGGC GATGACCGAT
ATCGCCTGCG CGATGGACAT CATGCTGCGG CTTCGGATCA AGGGCGTCGG GATTTCGATC
GACGATTTCG GTACCGGCTA TTCATCGCTC GCGGTGCTCG CCAGAATGCC CTTCAGCGAG
CTCAAGATCG ATCGCAGTTT CGTCAGGGAT TGCCTCACCG ACGCCGACAT GTGGAAAGTG
GTGTCGGTGT CGGTCGCGAT CGCGCATCAG TACAACATGC AGGCGGTGGC CGAGGGCATC
GAGGATGCCG AAACCTGGCG GGCCCTCGAT GGATTGGGGT GCGATATCGG CCAGGGATTC
GGCTTCTCGC GGGCGCTGCG CAGAGGCGCT TTCGTCGAGT GGTGCCGGCA CTGGGACGAG
CGGCTGACGT CGGTCGGTCC GGCGGCGGAG CGACACCGCG CCTGCGCCAC CTGA
|
|---|
| Protein sequence | MPDSTDQAQA ARILVVDDDP VQGAIISGVC RRRGYRPTFA SSYQAAVDQI AAGDFECITI
DLSLGDRDGI ELLRLIAGGG RSPRVIVISG CDQRILSATV RMAHAVGVVD AVSLQKPIDL
ASLGDALSFG AGEQPSLRHR PDRQSRPVTA ADLSRGLETG ELYPAFQPKV NLATGRVVGC
EALARWDSPT FGSVGPDVFI PLAEQSGLIK PLTLLMLRQS IELARYFFDI DPSFSVAVNL
SAALLSDTTI PEEVERLLDG TGLPARSLII EVTESTAMTD IACAMDIMLR LRIKGVGISI
DDFGTGYSSL AVLARMPFSE LKIDRSFVRD CLTDADMWKV VSVSVAIAHQ YNMQAVAEGI
EDAETWRALD GLGCDIGQGF GFSRALRRGA FVEWCRHWDE RLTSVGPAAE RHRACAT
|
|---|
| |