Gene RPB_3852 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_3852 
Symbol 
ID3911656 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp4404716 
End bp4407355 
Gene Length2640 bp 
Protein Length879 aa 
Translation table11 
GC content66% 
IMG OID637885753 
Productmulti-sensor hybrid histidine kinase 
Protein accessionYP_487456 
Protein GI86750960 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0452097 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.946176 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCTTC CCGCCTCGAT CCGCCCCCAG CTCAAACGCT CGAAGATCGC CCTCAGGCTC 
ACCGCGGTCG CGCTGATCCT GTCGATCTTC GGGACCAATC TGATTTTTCT CGGCAACCTG
CGCGAGACCA CGCTGCAGAC CGCGGAAGCC AATCTGCAGC GCTACAATCT CACCCTCTCG
GAGGAAGCCG ACCGCTCGTT CAAGTCGCTC GACCTCGTGC TGTCCAGCGT CAGCGACTAT
CTCGCTCGGC GCGAAGTCAC CGACGGCCAT TCCTACAAGC GCACGGTGTC CGGTCAGGAC
ACCCATATCC TGCTGAAGGA GAAGATCACC GGCCTGCCCC AGATCGACGC CGTGTCGTTG
ATCGACGACC AGGGAAAGCT GATCAACTTC TCGCGCTATT GGCCGATCCC CGACGTCGAC
GTGTCGGACC GTGATTACTT CAAGGCGCTC AGCAGCGACA CCAATCTCGA GACCTTCATC
AGCGCGCCGG TCCGGAACCG CGGCAACGGT ACCTGGACCA TCTACCTCGC ACGCCGCCTC
GACGACCCCA ACGGTAAGTT CATGGGGATG CTGTTGGGGG CGATGTCGCA GCGCTACGTC
GAGAATTTCT TCGCCGCGAC CGCGCCCGGT CCGGATACCG AGATCGCGCT GGTGCGCGAC
GACGACCTGC TGCTGGCGGC ATATCCGCAT TCGGAGGCGA TCGGCCGGTT GAAATCGTCC
GGCGGACGCA GCGCCTTGGA GGCCGGCGGC AAGCTCCGCG AGGCCGGCAG CGGAATCGGC
AAGCCCCTGA TCCGTTCGGC GCGGATGCTG CCGAACTATC CGGTTCTGGT GACGGTGGCA
CAGCACGAGG ACGGCTTGCT GCGCAGCTGG CAGGAGATGG CGACGCTGCT GATCGCCATG
TCGGTCGTCA GCGCACTGAT CATCCTCACC GGCAGCATCG CGATCGCCCG CTGGTGGAAC
AAGCAGGCCG TCTACACCGA GGCCGCCGAA GCCGCCAGCG CCGCGAAATC GAGCTTCGTG
GCGATGATGA GCCACGAGAT CCGCACCCCC ATGAATGCGG TGCTCGGCCT CGCCAACAAC
CTGCTCGAGA CCAGGCTCGA CGCCGACCAG CGTCGCGCCG TCGTCGGCAT TCACGACGCC
GGCGACAACC TGCTGGAGAT CCTCGACGAC ATTCTCGATT TCTCCAAGCT CGAAGCCGGA
CGGCTGTCGC TCGAACTGAT CCCGTTTTCG CCGCACAACA TCGTCGAACA TTCGCTGAGC
ATGATCGGCC CGCGCGCGAT CGCCAAGGGG CTCGCGATCG GCACCGACAT CAGCGATGAT
CTGCCACGGG CGCTGATCGG CGATCCTGGA CGGATTCGCC AGGTCCTGCT CAATCTGCTT
TCCAACGCGG TGAAGTTCAC CTCGTCGGGG AAGATCGTCG TCGCGCTGGA ATGTCTATCG
AACGACGGCT CTGCCGCGCG CATTCAATGG ACCGTCAGCG ACACCGGGAT CGGGATCGAC
CCCGACAAGA TCGAATCTCT GTTCAGTGAT TTCGTCCAAG CCGACAATTC GATCCGGCGC
CGGTTCGGCG GGTCGGGGCT CGGCCTCGCC ATCAGCCGGC GCCTGATCGA ACAGATGGGC
GGGCGGATCA ACGTCACCTC GACGCCGGGC CAGGGTTCCG CGTTCCGCTT CACGCTGACG
CTGCCGGTCA CGACGGACGT TCCGCCGAAG GAGGAAGACC ACCAGCTTCG CTACGTCGAT
CTGAAGGCGC GGATCGCCGC CGGCGGACGG CCATTGCGGC TGCTGATCGT CGACGACAAC
CCCACCAACC GCGCGGTCGC CGGCCAGATG CTGAGCGAAT TCGCGATCCA GTGCGACACG
GCCTGCGACG GCGCCGAAGC CGTCACGGCG GCGACGCGGT TCAGTTACGA CGCGATCCTG
ATGGACATGC GGATGCCGGA GATGGACGGG CTGGAAGCGA CCCGCGCGAT CCGCGCCAAG
GGGGGCGCGC TGGCGACGGT TCCGATCATC GCGTTCACCG CGAACGCATT CGCCGAGGAC
GAGAAGGCCT GCCGCGAGGC CGGCATGAAC GATCACATCG CCAAACCGGT CCGCAAGAAC
GTGCTGGTCG GCGCCATCCT GCGCGCGCTG CCGCCGCTCC CGTCGCCGGG CGCGCGCAGC
GTCCGGCCGG CGCCGGAGGC GACCGGAGCC CCGCCGCCCA CCGGCTCGCA GAACGGCACC
GCAACGCCGC GGGCTCCGGC GCCGATCGCC CATGCGGTCG ACACCGGCGC CGCCGTCCGC
CTCTACGTCG GGAAAACCGC ATTCGATCAT CTGGTCGCCG AAATCGGCGA GCAGTCGAGC
CGCGATGTGC TGGCGGTGTT CATCCGGGAC ACCGCGGCGC GGCTCGAATT GCTGGCGGCC
CTCGAGATCG GAACCGACCG GCGAAAGATC GAACGCGAAG CGCATTCGCT GAAGAGCGCG
GCAGCCACCT TCGGGCTCGA CCGGCTCGCG AGCCTCGCCC GCGAACTCGA GCGCACCGCG
CCGCAACTGT CAGAAGCCGG CTACGTCGCG CAGGTCTCGG AGATCAGGGC CGCGTTCGCA
GCCGCACAGC GGGCGCCGAT CGGTGACGAT TGTCTGGTCG AATTCGCCGA CCCGGCATGA
 
Protein sequence
MTLPASIRPQ LKRSKIALRL TAVALILSIF GTNLIFLGNL RETTLQTAEA NLQRYNLTLS 
EEADRSFKSL DLVLSSVSDY LARREVTDGH SYKRTVSGQD THILLKEKIT GLPQIDAVSL
IDDQGKLINF SRYWPIPDVD VSDRDYFKAL SSDTNLETFI SAPVRNRGNG TWTIYLARRL
DDPNGKFMGM LLGAMSQRYV ENFFAATAPG PDTEIALVRD DDLLLAAYPH SEAIGRLKSS
GGRSALEAGG KLREAGSGIG KPLIRSARML PNYPVLVTVA QHEDGLLRSW QEMATLLIAM
SVVSALIILT GSIAIARWWN KQAVYTEAAE AASAAKSSFV AMMSHEIRTP MNAVLGLANN
LLETRLDADQ RRAVVGIHDA GDNLLEILDD ILDFSKLEAG RLSLELIPFS PHNIVEHSLS
MIGPRAIAKG LAIGTDISDD LPRALIGDPG RIRQVLLNLL SNAVKFTSSG KIVVALECLS
NDGSAARIQW TVSDTGIGID PDKIESLFSD FVQADNSIRR RFGGSGLGLA ISRRLIEQMG
GRINVTSTPG QGSAFRFTLT LPVTTDVPPK EEDHQLRYVD LKARIAAGGR PLRLLIVDDN
PTNRAVAGQM LSEFAIQCDT ACDGAEAVTA ATRFSYDAIL MDMRMPEMDG LEATRAIRAK
GGALATVPII AFTANAFAED EKACREAGMN DHIAKPVRKN VLVGAILRAL PPLPSPGARS
VRPAPEATGA PPPTGSQNGT ATPRAPAPIA HAVDTGAAVR LYVGKTAFDH LVAEIGEQSS
RDVLAVFIRD TAARLELLAA LEIGTDRRKI EREAHSLKSA AATFGLDRLA SLARELERTA
PQLSEAGYVA QVSEIRAAFA AAQRAPIGDD CLVEFADPA