| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3801 |
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| Symbol | |
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| ID | 3911604 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 4336545 |
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| End bp | 4338686 |
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| Gene Length | 2142 bp |
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| Protein Length | 713 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637885702 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_487406 |
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| Protein GI | 86750910 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.386604 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCCCG GACGCAACAA GGCCCCCAGC GCCTCGCCGC CCTACGACAA ATCCTACGAG
CCCGTGCTGC TGCTGATGCG GGCGCGGGTG ATGCACCAGG CCGGGCAATA CGACGAGGCG
AAATCCGCCT ACAAGAAGGT GCTGAAGAAG AGCCCGAACA ACTTCCAGGC GCTGCACTTT
CTCGGCCTCG CCGAATTTCA GACCGGACAT TTCGACGCCG GCATCCGCTC GCTGAAGCGC
GCGCTGATCG AAGACCCGAA ATCGGCGCAG GCGCAGTCCG ACCTCGGCAG CGTGCTCAAC
GCCGCGCAGC GCTACGACGA AGCGCTGGTC GCCTGCGACA AGGCGATCGC GCTGGATCCG
GCGCTCGCCT TCGCCCATGC CAATCGCGGC AACGTGCTGA TCACGCTCGG CCGCTACGAC
GAAGCGGTCG CCAGCCTCGA CCGGGCGCTC GAGCTCGTTC CGGACCACAC CGACACCTGG
AACGACCGCG GCAACGCGCT GCACAAGCTC GGCCGCTACG ACGAGGCGCT GAACAGCTAC
GCCCAGGCGA TCAGGATCGA TCCGCTGCAC GACGTCGCCT TCATGAACCA GGCGACCACG
CTGAAGGAGA TGAAGCAGTT CGACCTGGCG CTGGCGAGCT ACGACCGCGC GCTGTCGATC
GGCAAGCGAC CGATCGACGC CGGCATCGCG CGCGCCGATC TGCTGCTGCA GATGAAGAAC
GTCGAGGGCG CGCTCGCGAC CTGCACGGCG CTGCTGAAGA TCGAGCCCGA CTTCGTCCCC
GCCCTGACGC TGCTCGGCAA TTGCATGGCC TCGCTCGGCG ACGCCGACAC CGCGACCGCG
CTGCACGGCC GCGCGCTGGC GCTGAAGCCG GACTACGAGC CGGCAATTTC CAGCCGGATC
TTCTCGATGG ACTTCTGCTC CGATGCGGAC TTCCAGTCGC AGCAGGCCGC GCGCGCGGAC
TGGTGGAAGC ACGTCGGCGC GCGGCTGTAC AAGAGCCATG CGGCGCCGCT CGCCAACGAT
CGCGACCCAG AGCGCCGCCT GGTGGTCGGT TACGTCTCGG CCGATTTCCG CCAGCATTCC
GCGGCGTTCT CGTTCCGCCC GGTGATCGAG AATCACGACC GCACGCAGGT CGAAGTGATC
TGCTACTCCG GCGTCGTGCT GCCCGACGCC GCGACCAAAT CGTTCGAGGC GATCGCCGAC
AGGTGGCGCG ACTCCTCGCA GTGGACCGAC GCCAGGCTCG CCGACACGAT CCGCGCCGAC
AAGGTCGACA TCCTGATCGA CCTGTCGGGC CATTCGGCCG GCAACCGCCT GCGGGTGTTC
GCGCGAAAGC CGGCGCCGGT GCAGGTCACC GCCTGGGGCC ACGCCACCGG CACCGGCCTG
CCGGTGATCG ACTATCTGCT GGCCGATCCG GTCGCGGTAC CCAACGAGGT TCGACAGTTC
TATGCGGAAG CGATCTACGA TCTGCCCTCG ATCGTGATCA TCGAACCGCC GCCTGCGGGG
CTGCATGCCA CCGAGCTGCC GTTCGACCGC AACGGCTATC TGACCTACGG CTCGCTCAAC
CGCATCAGCA AGATCTCGGA TGCGGCGATC GCGGCCTGGG CGCGGATCAT GACCGGCAAT
CCGACCTCGC GGCTGATCCT GAAGGATCAC CAGATCGACG ATCCCGCCGT GCGACAGACG
CTGCTCGACA AGTTCGCCGC GCAAGGCATC GCCGCCGAAC GCCTCACGCT GCTCGGTTCG
ACGTCGCGGC AGGAGCATCT GGAGACGCTG CAACAGATCG ACCTCGGCCT CGATCCGTTC
CCGCAAGCCG GCGGCGTTTC GACCTGGGAA GCGCTGCATA TGGGCGTGCC GGTGGTGAGC
CGGCTCGGCA ACACCGTCGC CAGCCGGGTT GGCTCTGCGA TCCTGTCGGC CGCCGGCCTG
CCGGACTTCA TCGCCACCAG CGAAGAGCGC TACATCGCGA TCGCGCTCGA TCCGGATCGC
GAGCGGCTGC GCGCGATCCG CCGCGGCCTG CCCGCCTTCA TCGCCGAGCG CTGCGGCCCC
GCCGCCTACA CCCGCGCCGT CGAGGACGCC TACCGCACGA TGTGGCGCCG CTGGTGCGCG
ACGCCGGCGG ACGCGAAGCC GGCGGACGGC AAGCGGCGCT GA
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| Protein sequence | MQPGRNKAPS ASPPYDKSYE PVLLLMRARV MHQAGQYDEA KSAYKKVLKK SPNNFQALHF
LGLAEFQTGH FDAGIRSLKR ALIEDPKSAQ AQSDLGSVLN AAQRYDEALV ACDKAIALDP
ALAFAHANRG NVLITLGRYD EAVASLDRAL ELVPDHTDTW NDRGNALHKL GRYDEALNSY
AQAIRIDPLH DVAFMNQATT LKEMKQFDLA LASYDRALSI GKRPIDAGIA RADLLLQMKN
VEGALATCTA LLKIEPDFVP ALTLLGNCMA SLGDADTATA LHGRALALKP DYEPAISSRI
FSMDFCSDAD FQSQQAARAD WWKHVGARLY KSHAAPLAND RDPERRLVVG YVSADFRQHS
AAFSFRPVIE NHDRTQVEVI CYSGVVLPDA ATKSFEAIAD RWRDSSQWTD ARLADTIRAD
KVDILIDLSG HSAGNRLRVF ARKPAPVQVT AWGHATGTGL PVIDYLLADP VAVPNEVRQF
YAEAIYDLPS IVIIEPPPAG LHATELPFDR NGYLTYGSLN RISKISDAAI AAWARIMTGN
PTSRLILKDH QIDDPAVRQT LLDKFAAQGI AAERLTLLGS TSRQEHLETL QQIDLGLDPF
PQAGGVSTWE ALHMGVPVVS RLGNTVASRV GSAILSAAGL PDFIATSEER YIAIALDPDR
ERLRAIRRGL PAFIAERCGP AAYTRAVEDA YRTMWRRWCA TPADAKPADG KRR
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