Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_3773 |
Symbol | fliR |
ID | 3911576 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 4309284 |
End bp | 4310051 |
Gene Length | 768 bp |
Protein Length | 255 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637885674 |
Product | flagellar biosynthesis protein FliR |
Protein accession | YP_487378 |
Protein GI | 162138518 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1684] Flagellar biosynthesis pathway, component FliR |
TIGRFAM ID | [TIGR01400] flagellar biosynthetic protein FliR |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0733885 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCGCATCG ACATCTCGTT CCTGCCCGCG CTCGGCGCCG CCTTCATGCT GGTGTTCGCC CGCGTCGGCG CGATGGTGAT GCTGTTGCCG ACGCTCGGCG AGAGCAACAT CCCGACGCGG ATCAAGCTGT CGATCGCACT CGGCCTGACG CTGATCATCC TGCCATTGCA CCGCAATGCC TATCAGGTCG ACATGTCGTC GCTGACGCCG CTGCTGGTGC TGATGATTCA GGAAATCATC ATCGGCATCG TGCTCGGCGC CACCGCGCGG GTGACGCTGT CGGCGCTGCA GGTCGCAGGT TCGGTGATCG CACAGCAACT CGGGCTCGGC TTCGTCACGG CGGTCGATCC GACCCAGGGG CAGCAGGGGC TGCTGATCGG CAATTTCCTC ACCATCCTCG GCGTGACGAT GCTGTTCGCC ACGGACTCGC ATCATCTGGT GATCGAGGCG CTCAGCGACA GCTACAAGAT CTTCGCGCCC GGCGAATTGC TGAACAGCGG CGACGTCGCC GCGCTCGCCA CCAAGGCGTT CGCCGCCTCG TTCAAGATCG GCATGCAGCT CGCCGCGCCG TTCCTGGTGT TCGGCCTGGT GTTCAACATC GGCCTCGGCA TCCTGGCGCG GCTGATGCCG CAGATGCAGG TGTATTTCGT CGGCGTGCCG CTCTCGATCA TGATCGGGTT CGTCATCTTC GCCGCCGTGC TGACGACGAT GATGGGCACG TTTCTCGCCT ATTTCGGCGG CGTCATGCAG GAATTGACGC CTCGCTGA
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Protein sequence | MRIDISFLPA LGAAFMLVFA RVGAMVMLLP TLGESNIPTR IKLSIALGLT LIILPLHRNA YQVDMSSLTP LLVLMIQEII IGIVLGATAR VTLSALQVAG SVIAQQLGLG FVTAVDPTQG QQGLLIGNFL TILGVTMLFA TDSHHLVIEA LSDSYKIFAP GELLNSGDVA ALATKAFAAS FKIGMQLAAP FLVFGLVFNI GLGILARLMP QMQVYFVGVP LSIMIGFVIF AAVLTTMMGT FLAYFGGVMQ ELTPR
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