Gene RPB_3773 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_3773 
SymbolfliR 
ID3911576 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp4309284 
End bp4310051 
Gene Length768 bp 
Protein Length255 aa 
Translation table11 
GC content64% 
IMG OID637885674 
Productflagellar biosynthesis protein FliR 
Protein accessionYP_487378 
Protein GI162138518 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1684] Flagellar biosynthesis pathway, component FliR 
TIGRFAM ID[TIGR01400] flagellar biosynthetic protein FliR 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.0733885 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCATCG ACATCTCGTT CCTGCCCGCG CTCGGCGCCG CCTTCATGCT GGTGTTCGCC 
CGCGTCGGCG CGATGGTGAT GCTGTTGCCG ACGCTCGGCG AGAGCAACAT CCCGACGCGG
ATCAAGCTGT CGATCGCACT CGGCCTGACG CTGATCATCC TGCCATTGCA CCGCAATGCC
TATCAGGTCG ACATGTCGTC GCTGACGCCG CTGCTGGTGC TGATGATTCA GGAAATCATC
ATCGGCATCG TGCTCGGCGC CACCGCGCGG GTGACGCTGT CGGCGCTGCA GGTCGCAGGT
TCGGTGATCG CACAGCAACT CGGGCTCGGC TTCGTCACGG CGGTCGATCC GACCCAGGGG
CAGCAGGGGC TGCTGATCGG CAATTTCCTC ACCATCCTCG GCGTGACGAT GCTGTTCGCC
ACGGACTCGC ATCATCTGGT GATCGAGGCG CTCAGCGACA GCTACAAGAT CTTCGCGCCC
GGCGAATTGC TGAACAGCGG CGACGTCGCC GCGCTCGCCA CCAAGGCGTT CGCCGCCTCG
TTCAAGATCG GCATGCAGCT CGCCGCGCCG TTCCTGGTGT TCGGCCTGGT GTTCAACATC
GGCCTCGGCA TCCTGGCGCG GCTGATGCCG CAGATGCAGG TGTATTTCGT CGGCGTGCCG
CTCTCGATCA TGATCGGGTT CGTCATCTTC GCCGCCGTGC TGACGACGAT GATGGGCACG
TTTCTCGCCT ATTTCGGCGG CGTCATGCAG GAATTGACGC CTCGCTGA
 
Protein sequence
MRIDISFLPA LGAAFMLVFA RVGAMVMLLP TLGESNIPTR IKLSIALGLT LIILPLHRNA 
YQVDMSSLTP LLVLMIQEII IGIVLGATAR VTLSALQVAG SVIAQQLGLG FVTAVDPTQG
QQGLLIGNFL TILGVTMLFA TDSHHLVIEA LSDSYKIFAP GELLNSGDVA ALATKAFAAS
FKIGMQLAAP FLVFGLVFNI GLGILARLMP QMQVYFVGVP LSIMIGFVIF AAVLTTMMGT
FLAYFGGVMQ ELTPR