Gene RPB_3709 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_3709 
Symbol 
ID3911511 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp4246466 
End bp4247656 
Gene Length1191 bp 
Protein Length396 aa 
Translation table11 
GC content67% 
IMG OID637885611 
Productlow termperature growth protein 
Protein accessionYP_487315 
Protein GI86750819 
COG category[S] Function unknown 
COG ID[COG4292] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.848697 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGACGACGG AGGCATCGAG CGCCGCCAAT CTGCTCCGCG TGCGAAGACC GCACGAACAC 
AGCCGCGTCA CCTATGTCGA ATTGTTCTTC GACCTGGTGT TCGTGTTCGC CGTCACCCAG
GTGTCGCATT TCCTGCTGGG GCATGTCACG CCGGTGGGCG CGCTGCAGGC GCTGATCCTG
ATGTCGGCGA TCTGGTGGGT GTGGGTCTAC ACTTCCTGGA TCACCAACTG GCTCGACCCC
GAACTCACCC GCGTCCGGCT GATGCTGTTC GCGCTGATGA GCGCCGGGTT GCTGCTGTCG
ACCTCGATCC CGCGCGCCTT CGAGAGCCGC GGCCTCGCTT TCGCGCTGGC CTTCGTGGCG
ATGCAGGTCG GACGCAGTGC CTTCGCCTTT CTCTCGACGC CGAAAGCCGA GCCGCTGCGG
ATCAATTTCT TCCGGATCAC GAGTTGGCTG TGCGTCAGCG GCGTGTTCTG GATCGCCGGC
GGCCTGCTCG ATGGCCCCGC GCGGATCGCG CTGTGGATGA TCGCGCTGGC GATCGAATAT
GCCGGGCCGG TGGCGGGCTT CTACGTGCCG TGGATCGGCG CCTCGACGAC GCAGGATTGG
AGCGTCGAGG GCGGCCATAT GGCGGAGCGC TGCGCGCTGT TCATCATCAT CGCGCTCGGC
GAATCGATCG TGGTGACGGG CGCGACCTTC GCCGGCATCG AATGGACCGT GACGACCTTC
GCCGCCTTCG GCTCGACGCT GATCGGCGCG ATCGCGATGT GGTGGATCTA CTTCCACATC
GGCGTGCATC TCGGCTCGGA GAAGATCTCG CAGTCGAGCG ATCCCGGCCG GCTGGCGCGG
CTCGCCTACA CCTACATCCA CCTGCCGATC GTCGCCGGAA TCGTCGTCAC CGCGGTCAGT
GACGAACAGG TGCTGGCGCA TCCCAGCGGC CACGCCGACA TCAAGGTGAC CCTCACCACG
ATCGGCGGCC CGCTGCTGTT CCTGATCGGC GTGCTCTTGT TCAAGCGCGC GGTGCGCGGC
CATCTGCAGC CGTCGCACAT GGCCGGCATC GCCGCGCTGC TGGCGCTGAT CCCGGTGGCG
CCGCTGATGG CCCCGCTGGC GCTGTCGATC GCGACCACGG CGATCCTGTT GGCGGTCGGC
ATCTGGGAAG CCGTCTCGCT CGGCGCCGCC GCGCGCTCGC CGGTGGAGTG A
 
Protein sequence
MTTEASSAAN LLRVRRPHEH SRVTYVELFF DLVFVFAVTQ VSHFLLGHVT PVGALQALIL 
MSAIWWVWVY TSWITNWLDP ELTRVRLMLF ALMSAGLLLS TSIPRAFESR GLAFALAFVA
MQVGRSAFAF LSTPKAEPLR INFFRITSWL CVSGVFWIAG GLLDGPARIA LWMIALAIEY
AGPVAGFYVP WIGASTTQDW SVEGGHMAER CALFIIIALG ESIVVTGATF AGIEWTVTTF
AAFGSTLIGA IAMWWIYFHI GVHLGSEKIS QSSDPGRLAR LAYTYIHLPI VAGIVVTAVS
DEQVLAHPSG HADIKVTLTT IGGPLLFLIG VLLFKRAVRG HLQPSHMAGI AALLALIPVA
PLMAPLALSI ATTAILLAVG IWEAVSLGAA ARSPVE