| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3699 |
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| Symbol | rpsD |
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| ID | 3911501 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 4237406 |
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| End bp | 4238023 |
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| Gene Length | 618 bp |
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| Protein Length | 205 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637885601 |
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| Product | 30S ribosomal protein S4 |
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| Protein accession | YP_487305 |
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| Protein GI | 86750809 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0522] Ribosomal protein S4 and related proteins |
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| TIGRFAM ID | [TIGR01017] ribosomal protein S4, bacterial/organelle type |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.658744 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAAAGC GCAGTGAAGC CAAGTATAAA ATCGACCGCC GGATGGGCCA GAATATCTGG
GGCCGCCCGA AGAGCCCGGT CAACCGCCGC GAATACGGCC CCGGCCAGCA CGGCCAGCGC
CGCAAGGGCA AGCTCTCCGA CTTCGGCGTG CAGCTGCGCG CCAAGCAGAA GCTGAAGGGC
TATTACGCCA ATATTTCCGA GCGCCAGTTC CATTCGATCT ATGTCGAGGC CACCCGCCTC
AAGGGCGATT CGGGCGAGAA CCTGATCGGC CTCCTCGAGC GCCGGCTCGA CACCGTGGTG
TACCGCGCCA AATTCGTCTC GACGATGTTC GCGGCGCGCC AGTTCATCAA TCACGGCCAC
ATCAAGGTCA ACGGCAAGCG GGTCAACATC TCGAGCTACA AGGTTCGCGT CGGCGACCTG
ATCGAGGTCA AGGAATCCTC GAAGCAGCTC GCCTTCGTGC TCGAAGCGAG CCAGCTCGCC
GAACGCGACG TGCCGGACTA CATCGAGGTC GACCACAACA AGATGACCGC CAAGTTCGGC
CGCATCCCGG CTTTGACCGA CGTGCCCTTC GCGGTTCAGA TGGAGCCGCA TCTGATCGTC
GAATTCTATT CGCGCTAA
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| Protein sequence | MTKRSEAKYK IDRRMGQNIW GRPKSPVNRR EYGPGQHGQR RKGKLSDFGV QLRAKQKLKG
YYANISERQF HSIYVEATRL KGDSGENLIG LLERRLDTVV YRAKFVSTMF AARQFINHGH
IKVNGKRVNI SSYKVRVGDL IEVKESSKQL AFVLEASQLA ERDVPDYIEV DHNKMTAKFG
RIPALTDVPF AVQMEPHLIV EFYSR
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