| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3672 |
|---|
| Symbol | |
|---|
| ID | 3911474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 4212307 |
|---|
| End bp | 4213908 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637885574 |
|---|
| Product | 4-diphosphocytidyl-2C-methyl-D-erythritol synthase |
|---|
| Protein accession | YP_487278 |
|---|
| Protein GI | 86750782 |
|---|
| COG category | [H] Coenzyme transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0303] Molybdopterin biosynthesis enzyme
[COG2068] Uncharacterized MobA-related protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGTTCG GGCCGCGCCG TCCGGCCGAT GCGATCGGCG GCGTCACCGT GCATTCGCTG
CGGCAGAACG GATTGCTGCT GAAGAAGGGC ACCGCGATCG GTCCGGCCGA AGTCGACGCG
CTGGAGCGCG CCGGCGTCGG TGAAATTGTC GTCGTTCAAC TCGAGTCGGG TGATGTCTCG
GAGGACGTCG CAGCAGCGGA CGTGGCGCAG GCCGTCGCCG GCGACGGTGC CAGCGTCGAG
CGCGCCTTCA CCGGCCGCGC CAATCTGTTC GCGCAGCGGC CCGGCGTGCT GGTGGTTGAT
CGCGCCGCGG TCGATCGGGT CAATGCGGTC GACGAGGCGA TCACCTTCGC GACGCTGCCG
GCGTTCAAGC CGGTGGTCGA AGGCGAGATG ATCGCGACCG TCAAGCTGAT CCCGTTCGGC
GTCGAGGGGA GACTGCGCGA CGCCGCGGTG GCGGCTGCAC GAGGCTCCGC GCTGCAGGTC
GCGCCCTATG TCATCAAGCG TGTCGGCATC GTGTCGACGC AACTGCCCGG CCTCGCGTCC
AAGGTGATCG ACAAGACGCT GCGCGTCACC GCCGAGCGGC TGGCGCCGGC GGGTGCCGAG
ATCATCGCCG AGCGCCGCAT CGCTCATGAC GAATCTGCGC TCGCAACGGC GCTGCAGGAA
TTGCTCGGCC TCGGCGCCGA GCTGGTGATC GTGTTCGGCG CCTCGGCGAT CGCAGACCGC
CGCGACGTCA TCCCGGCGGC GATCGGCGCC ATCGGCGGGC AGGTCGAGCA CTTCGGTATG
CCGGTCGATC CCGGCAATCT GCTGCTGATC GGCAGCGCGT CGGGCGTCCC GGTGCTGGGT
GCGCCGGGCT GTGCGCGCTC GCCGGTCGAG AACGGCTTCG ACTGGGTGCT GATGCGGCTG
CTGGCGGGAT TGCCCGTGAC GCGCGCCGAT ATCACCGGCA TGGGTGTCGG CGGGTTGCTG
ATGGAGATCG TGACCCGACC GCAGCCGCGC GTGCCGGTAG CCGAAGGTGG CCGCAATGTC
GCGGCGATCG TGCTCGCCGC CGGCCGCTCG ACCCGGATGG GCGGGCCGAA CAAGCTGCTC
GCCGAACTGA ACGGCACGCC GCTGGTGCGG ATCGTGACCG AGCAGGTATT GGCGTCGAAG
GCATCGCGCG CGGTCGTGGT CACCGGGCAT CAGGCCGACA AGGTCGAGGC GGCGCTGTCC
GGGCTCGATG TGTCGTTCGT CCATAACCCG GCGTTCGCCG AAGGGCTGGC GTCGTCGGTC
AAAGCCGGTA TCGCCGCTGT GCCGGACGAT GCCGATGGCG CGATTGTTTG TCTCGGCGAC
ATGCCGCTGA TCGATTCCGA ACTGATCGAC CGGCTGATCG ACGCGTTCGA TCCGGATCGC
GGCGGGCTGA TCGTGGTGCC GGTCGCAGAT GGCCGCCGCG GCAATCCAGT GCTGTGGTCG
CGGCGGTTCT TCGCCGAGCT GATGACGCTC GACGGCGACA TCGGCGCGCG CCACCTGATC
GCCAAGCATG CCGAGGCGGT GACCGAAGTG CCGGTCGATG GCCACGCTGC GTTTCTCGAT
ATCGATACGC CGCAGGCGCT CGAGGATGCC CGCCGGGGCT GA
|
|---|
| Protein sequence | MKFGPRRPAD AIGGVTVHSL RQNGLLLKKG TAIGPAEVDA LERAGVGEIV VVQLESGDVS
EDVAAADVAQ AVAGDGASVE RAFTGRANLF AQRPGVLVVD RAAVDRVNAV DEAITFATLP
AFKPVVEGEM IATVKLIPFG VEGRLRDAAV AAARGSALQV APYVIKRVGI VSTQLPGLAS
KVIDKTLRVT AERLAPAGAE IIAERRIAHD ESALATALQE LLGLGAELVI VFGASAIADR
RDVIPAAIGA IGGQVEHFGM PVDPGNLLLI GSASGVPVLG APGCARSPVE NGFDWVLMRL
LAGLPVTRAD ITGMGVGGLL MEIVTRPQPR VPVAEGGRNV AAIVLAAGRS TRMGGPNKLL
AELNGTPLVR IVTEQVLASK ASRAVVVTGH QADKVEAALS GLDVSFVHNP AFAEGLASSV
KAGIAAVPDD ADGAIVCLGD MPLIDSELID RLIDAFDPDR GGLIVVPVAD GRRGNPVLWS
RRFFAELMTL DGDIGARHLI AKHAEAVTEV PVDGHAAFLD IDTPQALEDA RRG
|
|---|
| |