| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3608 |
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| Symbol | |
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| ID | 3911410 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 4140591 |
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| End bp | 4141793 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637885510 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_487214 |
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| Protein GI | 86750718 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.221607 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.363906 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCACTG ACGCCCCGCC GCGCAAATCC CGTCGCGGGC TCGGCATCGC CGGCATCCTG
CTCGCCTGCG GTGCGGTCGC CGTCGTCGTC ACCGGGATCA GCGCACGCGA GAAGAGCAGC
GCGGACCTGC GCCACTGGAC CGACGAGCAG GCGATCTCCA GCGTCGCGGT GACCCGGCCG
GACGGTAAGG TGCTGACCAA TACGCTCGAT CTGCCGGGCC GGCTCGAGGC CTATTCCCGC
GCGCCGATCT ACGCCCGCGT CTCCGGCTAT GTGAAGAGCT GGAGCGCCGA CATCGGCGCT
CGGGTCAAGG CCGGGCAGGT GATCGCCGAG GTCGAGGCGC CCGATCTCGA TCAGCAATTG
CTGCAGGCGC GCGCCGATCT CGCCAGCCAG CAGGCCAGCG CGCGATTGTC CGAGGCGACG
CTGAACCGCC GCAAGACGCT GCTGGCGTCG AACTTCGTCT CGGCGCAGGA AATCGACGAG
CGCAGCGCGG ACCTCGCCAA CAAGAAGGCC GCGGTGAATT CCGGCCAGGC CAATGTCGAA
CGGCTGGAAG CACTGGCCGG CTACAAGAAG ATCACCGCGC CGTTCGACGG CGTCGTCACC
GAGCGCAACA CCGACGTCGG CGCGCTGATC AGCGCCGGCT CCAGCGCCGG ACCCGCGATG
TTCGTGGTGT CCGACATCGC GAAGCTGCGC GTCTACGTCA ACGTGCCGCA GACTTATGTG
CCGATGATCA AGATCGGCGC CAAGGCGGTG ATCACGCTGC CGGAATATCC GAACCGCAGC
TTCCCGGCGA CGGTCGAGGC CTCGTCGCAG GCGGTCGACG TGTCCTCGGG CACCACGCGG
ATGCAACTTG CCCTGGACAA CGCCAAGGGC GAGTTGATGC CGGGCGGCTA CGCCAATGTG
AAGCTCAGCC TGGTGCGCGA CGAGGTGTCG CTCTACATCC CGGCCAGCGC GCTGATGTTC
AACCGCAGCG GGCTGCGCGT CGCGGTCGTC GGCCCCGACG ATCGCGTGCA GCTCAAGACC
GTGACGATCG CTCGCGATCT CGGCCGCGAA ATCGAACTCG CCTCCGGCCT CTCACCCGAT
GACCGCATCA TCGTCGCGCC GCCCGACGGC ATCGCCGACG GCGAGAAAGT CCGCGTTGTC
GGCAATGATG CAGGCAAGGC CGGCAAGCCG ACCGCGTCGG AGAAGCAGGA CGTGAAGGGG
TAG
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| Protein sequence | MSTDAPPRKS RRGLGIAGIL LACGAVAVVV TGISAREKSS ADLRHWTDEQ AISSVAVTRP
DGKVLTNTLD LPGRLEAYSR APIYARVSGY VKSWSADIGA RVKAGQVIAE VEAPDLDQQL
LQARADLASQ QASARLSEAT LNRRKTLLAS NFVSAQEIDE RSADLANKKA AVNSGQANVE
RLEALAGYKK ITAPFDGVVT ERNTDVGALI SAGSSAGPAM FVVSDIAKLR VYVNVPQTYV
PMIKIGAKAV ITLPEYPNRS FPATVEASSQ AVDVSSGTTR MQLALDNAKG ELMPGGYANV
KLSLVRDEVS LYIPASALMF NRSGLRVAVV GPDDRVQLKT VTIARDLGRE IELASGLSPD
DRIIVAPPDG IADGEKVRVV GNDAGKAGKP TASEKQDVKG
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