| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3580 |
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| Symbol | |
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| ID | 3911382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 4104303 |
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| End bp | 4105613 |
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| Gene Length | 1311 bp |
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| Protein Length | 436 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637885482 |
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| Product | TRAP dicarboxylate transporter DctM subunit |
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| Protein accession | YP_487186 |
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| Protein GI | 86750690 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.263303 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.28531 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATGG ACAACGACGT GGTGGCGCTG ATCGGTTTCG TCAGCCTGTT CGCGCTGATG
CTGCTGCGCG TGCCGATCGG CATGGCGATG GGGCTCGTCG GCATCACCGG CTTCGGCTAT
CTCACCGGCT TCGAGCCGGC GCTGAAGCTG ATCGGCCAGA CCACGATGCG CACGGTCACC
GACTATTCCT TCGGCGTGAT CCCGATGTTC CTGCTGATGG GCGCCTTCGT GTCGGTGTCG
GGCATCAGCC GCGAATTGTT CCGCGCCGGC TACACCTTCG TCGGGCATTG GCGCGGCGGC
CTCGGTATCG CCACCATCGC GGCCTGCGGC GGCTTCGCGG CGATCTCCGG CTCGTCGGTG
GCGACGGCGG CGACGTTCTC CTCGGTCGCC TATCCGGAAA TGCGGCGCTA CAATTATCCG
CAATCCTTCT CCACCGGGGT GATCGCGGTC GGCGGCACGT TGGGCGCGAT GCTGCCGCCC
TCGACCGTGC TCGCGGTCTA CGGCATCATC ACCCAGCAGG ACATCGGCAA ATTGTTCATG
GCCGGCATCG TTCCCGGCCT GCTGGCGATC ATCATGCACA TGATCACCAT CGCGGTGATC
GGCGTGGCGC GGCCGGGCTA TCTGCCGACC GCCCCGCGCA GTTCGTGGCG CGACCGGATG
CTGGCGTTCC GCGACGTCTG GTCGCCGCTG CTGCTGTTCA TCTTCGTGAT CGGCGGGCTG
TATGGCGGGT TCTTCATCCC GACCGAGGCT GGCGCGGTCG GTGCCGTCGG CGCCTTCCTG
ATCGGCATCG CGCGCGGCAA GCTGACCCGC GACGGCATCC TGCAATCGCT GCTGCAGGCG
ACACGCACCG CGGCCGCGGT GTTCACCGTG CTGATCGGCG CGCTGTGTTT CGGCTATTTC
CTCACCATCA CCCAGACCCC GCAGGCGATC ACCGAGTTCC TCACCGGCCT CGGCCTCGGG
CCCTACGGCG TGCTGGCGCT GATCCTGGTG ATGTATCTGG TGCTCGGCTG TGTGATGGAC
GCGATGGCGA TGGTGATCCT CACCGTGCCG ATCGTGTTCC CGGTGATCAC CTCGCTCGGC
TTCGATCCGA TCTGGTTCGG CGTCATCGTG GTGGTGACGG TCGAACTCGG ACTGATCTCG
CCGCCGGTCG GGATGAACGT GTTCGTGATC AAGAGCGTGA TCAAGGATGT CAGCATGGGC
ACCGTGTTCA GGGGCGTGGC GCCGTTCGTG GTCACCGACG TGATCCGGCT GGTGATCCTG
ATCCTGTTCC CGATCCTGGC GACCTGGCTG CCGCAACGCA TGGTAGGATG A
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| Protein sequence | MTMDNDVVAL IGFVSLFALM LLRVPIGMAM GLVGITGFGY LTGFEPALKL IGQTTMRTVT
DYSFGVIPMF LLMGAFVSVS GISRELFRAG YTFVGHWRGG LGIATIAACG GFAAISGSSV
ATAATFSSVA YPEMRRYNYP QSFSTGVIAV GGTLGAMLPP STVLAVYGII TQQDIGKLFM
AGIVPGLLAI IMHMITIAVI GVARPGYLPT APRSSWRDRM LAFRDVWSPL LLFIFVIGGL
YGGFFIPTEA GAVGAVGAFL IGIARGKLTR DGILQSLLQA TRTAAAVFTV LIGALCFGYF
LTITQTPQAI TEFLTGLGLG PYGVLALILV MYLVLGCVMD AMAMVILTVP IVFPVITSLG
FDPIWFGVIV VVTVELGLIS PPVGMNVFVI KSVIKDVSMG TVFRGVAPFV VTDVIRLVIL
ILFPILATWL PQRMVG
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