Gene RPB_3560 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_3560 
Symbol 
ID3911362 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp4073618 
End bp4076740 
Gene Length3123 bp 
Protein Length1040 aa 
Translation table11 
GC content65% 
IMG OID637885462 
Productheavy metal efflux pump CzcA 
Protein accessionYP_487166 
Protein GI86750670 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG3696] Putative silver efflux pump 
TIGRFAM ID[TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.802571 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.499923 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGTCGCC TCGTTGCCAT TGCCGTCAAC CGCCGCTTTC TGATGGTTGC GATGTTCCTG 
CTGGTGATCG CCGGCGGGGT GGTCGCCTTC AACCAGCTCA ACATCGAAGC CTATCCCGAT
CCGACGCCGC CGATGGTCGA TATCGTCACG CAAAGCGCCG GGCTGTCAGC CGAGGAGGTC
GAGCGCTACA TCACGATTCC GATCGAGACC CAGGTCGCCG GCATCAAGAA CCTCAAGACG
ATCCGCACCA TTTCGCTGTA CGGCCTGTCC GACGTCAAAC TGCAGTTCTC GTTCGACTAC
ACCTACGACG AAGCGCTGCA GCAGGTGCTC AACCGGCTGT CGCAGCTGGC GCCGCTGCCG
GGCAATGCGC AGCCGGGCAT CTCGCCGCTC AGCCCGATCG GCGAGATCTT CCGCTATCGG
CTGGTCGGCC CGCCCGGCTA CAGCGTGCTC GATCTCAAGA CGTTGCAGGA CTGGGTGCTG
CAGCGCCGCT TCCGTGCGGT GCCGGGGGTG ATCGACGTCA CCGGCTGGGG CGGCAAGACC
AAGACCTATG AGGTCCAGGT CGATTTCAAC AAGCTGGTCG CCAACGGCCT GACGTTGCCG
CAGGTGCTGC AGGCGGTCTC CAATTCCAAC ATCAATGTCG GCGGCAACAC CGTCGATATC
GGCGCGCAGT CCGCGGTGGT GCGCGGCGTC GGGCTGATCC GCTCGATCGA CGATCTCGGC
AGCACCATGG TGGCGTCGAG CGGCGGCAAT CCGGTGCTGA TCCGGGATAT CGCCAAAGTC
AGCGTCGGCG AGAAGCCGCG GCTCGGCATC GCCGGCATGA ACCAGGACGA CGACATCGTC
CAGGGCATCG TGCTGATGCG GCGTGGCGAA AAGAGTTCGC CGACGATCGC GCGTGTCGAG
CAGACGGTGA AGGCGATCAA CGCCTCCGGC GTGCTGCCGC CGGGCGTGCG AATCGAGCGG
ATCTACGATC GCAAGGACCT GATCGACACC ACCACCCACA CGGTGCTGCA CAACATGGTG
GTCGGCATCC TGCTGATCGT GTTCCTGCAA TGGGTGTTCC TCGGCGACCT GCGCAGCGCG
CTGATCGTCG GCGCGACGAT TCCGTTCGCG CTGTTCTTCG CGGTGATCAT CCTGGTGCTG
CGCGGCGAAT CCGCCAATCT ATTGTCCGTC GGCGCGATCG ATTTCGGCCT GATCGTCGAC
GCCACCGTGA TCATGGTCGA GGCGATCTTC AGGCGACTGT CGCACACCAC CGCATTGTCG
GCCGAAGAGC TCAGCCATAT CTCGGCCGAC ACCGTCATGG GGATGAAGAG CCATGCCATC
CTGTCGGCGG CCGCCGACGT GTCGCGCTCG ATCTTCTTCG CCGCCGCGAT CATCATCGCG
GCGTTCCTGC CGCTGTTCAC GCTGTCGGGC GTCGAGGGCA ACATCTTCAG CCCGATGGCG
AAGACCTATG CCTACGCGTT GGCCGGCGGC CTGCTCGCCA CCTTCACCGT GACGCCGGCG
CTCTCCGCGA TCATCCTGCC GGCGCATGTG AAGGAGACCG AGACCTTGCT GATGCGCTGG
CTGCATCGCC TGTACACGCC GTTGCTGGGC TGGGCGGTCG CGAACCGGCG GCTGGTGATG
GCCGGCGCGG TCGGGCTGGT GGTGATGACG GTGATCGCGA CGCGCTTCCT CGGCCTCGAA
TTCCTGCCGA AGCTGGAGGA GGGCAATCTG TGGGTGCGCG CGACGCTGCC GCCGACGATC
TCGCTGGCCG AGGGCAACGG CTACGTCAAC CAGATGCGCA AGCTGATCGC GACCTTCCCC
GAGGTCGAAT CGGTGGTGTC GCAGCACGGA AGGCCCGACG ACGGCACCGA CGCCGCCGGC
CTGTTCAACG CCGAGTTCTT CGCGCCGCTG AAGCCGGCGT CGCAATGGCC CGGGTCGAAG
GACAAGGACG ATCTCACCGC GCGGATGCTG AAGCAGCTCC AGGAGAAATT CCCCGGCGTC
GAGTTCAATT TCTCGCAGTA TCTGCAGGAT AACGTCTCGG AAGCGGTGTC CGGCGTGAAG
GGCGAAAACT CGATCAAGCT GTACGGCAAC GATCTGCAGG CGTTGACCGA CACCGCCAAC
AAGATCAAGT CGGTGCTGGC GACGGTGCAG GGCGTGCAGG ATCTCGCGGT GTTCACCTCG
CTCGGCCAGC CGACCATCCA GATCGATGTC GACCGCGCCC GCGCCGCGCG CTATGGGCTG
ACGCCCGGCG ACATCAACGC CACCATCCGC ATCGCGATCG GCGGCGACAG CGCCGGGGAT
CTGTACGAAC CGGGCAGCGA CCGGCATTTC CCGATCATTG TTCGTCTGGC GCCGGAATAT
CGCAAGAGCG CCGAGGCGAT CCACAATCTG CGGATCGGCG TGCAGGGCCC GAACGGCATC
ACGCAGATCC CATTGACCGA AGTCGCTTCG ATCCAGCTCG TGTCCGGCGC CGCCTACATC
TATCGCGAAA ATCAGGAGCG CTATCTGCCG ATCAAGTTCT CGGTGCGCGA GCGCGATCTC
GGCAGCGCCA TCAAGGAGGC GCAGGACAAG GTTGCGGAAC AGGTCCAGTT GCCGCCGGGT
TCGCGTGCCG AATGGGTCGG CGAATTCGGT AATCTGCAGG ACGCGATCAA GCGGCTGTCG
ATCGTGGTGC CGATCAGCCT GGTTCTGATC GGCGTGCTGC TGTTCTTCAA TTTCGGCTCC
TTCACCGACA CGCTGCTGGC GATGAGCGTG ATTCCGATGG CGATCTTCGG CGGCGTGCTC
GGGCTGCTGG TGACCGGCAT CCCGTTCAGC GTGTCGGCTG CAATCGGCTT CATCGCACTG
TTCGGCATCG CGGTGATGGA CGGCATCATC ATCCTGTCGC AATACAATCA GCTCATCGAT
CAGGGCCTCG ACCGGGTCCG AGCCATCCTC CGCACCGGCG AGTTGCAATT GCGGCCGGTG
CTGATGACCT GCGTGGTGGC GGGCGTCGGG TTGTTGCCAG CCGCGGTGTC GAGCGGCATC
GGCTCGCAGG TGCAGAAGCC GTTGGCGATC GTGGTGGTCA CCGGGATGAT GCTCGCGCCG
GGGGTGATTC TGGTCACGCT GCCGGTGCTG ATCTCCTATT TCTCGCGCCG CCGCCTGGGA
TGA
 
Protein sequence
MGRLVAIAVN RRFLMVAMFL LVIAGGVVAF NQLNIEAYPD PTPPMVDIVT QSAGLSAEEV 
ERYITIPIET QVAGIKNLKT IRTISLYGLS DVKLQFSFDY TYDEALQQVL NRLSQLAPLP
GNAQPGISPL SPIGEIFRYR LVGPPGYSVL DLKTLQDWVL QRRFRAVPGV IDVTGWGGKT
KTYEVQVDFN KLVANGLTLP QVLQAVSNSN INVGGNTVDI GAQSAVVRGV GLIRSIDDLG
STMVASSGGN PVLIRDIAKV SVGEKPRLGI AGMNQDDDIV QGIVLMRRGE KSSPTIARVE
QTVKAINASG VLPPGVRIER IYDRKDLIDT TTHTVLHNMV VGILLIVFLQ WVFLGDLRSA
LIVGATIPFA LFFAVIILVL RGESANLLSV GAIDFGLIVD ATVIMVEAIF RRLSHTTALS
AEELSHISAD TVMGMKSHAI LSAAADVSRS IFFAAAIIIA AFLPLFTLSG VEGNIFSPMA
KTYAYALAGG LLATFTVTPA LSAIILPAHV KETETLLMRW LHRLYTPLLG WAVANRRLVM
AGAVGLVVMT VIATRFLGLE FLPKLEEGNL WVRATLPPTI SLAEGNGYVN QMRKLIATFP
EVESVVSQHG RPDDGTDAAG LFNAEFFAPL KPASQWPGSK DKDDLTARML KQLQEKFPGV
EFNFSQYLQD NVSEAVSGVK GENSIKLYGN DLQALTDTAN KIKSVLATVQ GVQDLAVFTS
LGQPTIQIDV DRARAARYGL TPGDINATIR IAIGGDSAGD LYEPGSDRHF PIIVRLAPEY
RKSAEAIHNL RIGVQGPNGI TQIPLTEVAS IQLVSGAAYI YRENQERYLP IKFSVRERDL
GSAIKEAQDK VAEQVQLPPG SRAEWVGEFG NLQDAIKRLS IVVPISLVLI GVLLFFNFGS
FTDTLLAMSV IPMAIFGGVL GLLVTGIPFS VSAAIGFIAL FGIAVMDGII ILSQYNQLID
QGLDRVRAIL RTGELQLRPV LMTCVVAGVG LLPAAVSSGI GSQVQKPLAI VVVTGMMLAP
GVILVTLPVL ISYFSRRRLG