Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_3560 |
Symbol | |
ID | 3911362 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 4073618 |
End bp | 4076740 |
Gene Length | 3123 bp |
Protein Length | 1040 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637885462 |
Product | heavy metal efflux pump CzcA |
Protein accession | YP_487166 |
Protein GI | 86750670 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG3696] Putative silver efflux pump |
TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.802571 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.499923 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGTCGCC TCGTTGCCAT TGCCGTCAAC CGCCGCTTTC TGATGGTTGC GATGTTCCTG CTGGTGATCG CCGGCGGGGT GGTCGCCTTC AACCAGCTCA ACATCGAAGC CTATCCCGAT CCGACGCCGC CGATGGTCGA TATCGTCACG CAAAGCGCCG GGCTGTCAGC CGAGGAGGTC GAGCGCTACA TCACGATTCC GATCGAGACC CAGGTCGCCG GCATCAAGAA CCTCAAGACG ATCCGCACCA TTTCGCTGTA CGGCCTGTCC GACGTCAAAC TGCAGTTCTC GTTCGACTAC ACCTACGACG AAGCGCTGCA GCAGGTGCTC AACCGGCTGT CGCAGCTGGC GCCGCTGCCG GGCAATGCGC AGCCGGGCAT CTCGCCGCTC AGCCCGATCG GCGAGATCTT CCGCTATCGG CTGGTCGGCC CGCCCGGCTA CAGCGTGCTC GATCTCAAGA CGTTGCAGGA CTGGGTGCTG CAGCGCCGCT TCCGTGCGGT GCCGGGGGTG ATCGACGTCA CCGGCTGGGG CGGCAAGACC AAGACCTATG AGGTCCAGGT CGATTTCAAC AAGCTGGTCG CCAACGGCCT GACGTTGCCG CAGGTGCTGC AGGCGGTCTC CAATTCCAAC ATCAATGTCG GCGGCAACAC CGTCGATATC GGCGCGCAGT CCGCGGTGGT GCGCGGCGTC GGGCTGATCC GCTCGATCGA CGATCTCGGC AGCACCATGG TGGCGTCGAG CGGCGGCAAT CCGGTGCTGA TCCGGGATAT CGCCAAAGTC AGCGTCGGCG AGAAGCCGCG GCTCGGCATC GCCGGCATGA ACCAGGACGA CGACATCGTC CAGGGCATCG TGCTGATGCG GCGTGGCGAA AAGAGTTCGC CGACGATCGC GCGTGTCGAG CAGACGGTGA AGGCGATCAA CGCCTCCGGC GTGCTGCCGC CGGGCGTGCG AATCGAGCGG ATCTACGATC GCAAGGACCT GATCGACACC ACCACCCACA CGGTGCTGCA CAACATGGTG GTCGGCATCC TGCTGATCGT GTTCCTGCAA TGGGTGTTCC TCGGCGACCT GCGCAGCGCG CTGATCGTCG GCGCGACGAT TCCGTTCGCG CTGTTCTTCG CGGTGATCAT CCTGGTGCTG CGCGGCGAAT CCGCCAATCT ATTGTCCGTC GGCGCGATCG ATTTCGGCCT GATCGTCGAC GCCACCGTGA TCATGGTCGA GGCGATCTTC AGGCGACTGT CGCACACCAC CGCATTGTCG GCCGAAGAGC TCAGCCATAT CTCGGCCGAC ACCGTCATGG GGATGAAGAG CCATGCCATC CTGTCGGCGG CCGCCGACGT GTCGCGCTCG ATCTTCTTCG CCGCCGCGAT CATCATCGCG GCGTTCCTGC CGCTGTTCAC GCTGTCGGGC GTCGAGGGCA ACATCTTCAG CCCGATGGCG AAGACCTATG CCTACGCGTT GGCCGGCGGC CTGCTCGCCA CCTTCACCGT GACGCCGGCG CTCTCCGCGA TCATCCTGCC GGCGCATGTG AAGGAGACCG AGACCTTGCT GATGCGCTGG CTGCATCGCC TGTACACGCC GTTGCTGGGC TGGGCGGTCG CGAACCGGCG GCTGGTGATG GCCGGCGCGG TCGGGCTGGT GGTGATGACG GTGATCGCGA CGCGCTTCCT CGGCCTCGAA TTCCTGCCGA AGCTGGAGGA GGGCAATCTG TGGGTGCGCG CGACGCTGCC GCCGACGATC TCGCTGGCCG AGGGCAACGG CTACGTCAAC CAGATGCGCA AGCTGATCGC GACCTTCCCC GAGGTCGAAT CGGTGGTGTC GCAGCACGGA AGGCCCGACG ACGGCACCGA CGCCGCCGGC CTGTTCAACG CCGAGTTCTT CGCGCCGCTG AAGCCGGCGT CGCAATGGCC CGGGTCGAAG GACAAGGACG ATCTCACCGC GCGGATGCTG AAGCAGCTCC AGGAGAAATT CCCCGGCGTC GAGTTCAATT TCTCGCAGTA TCTGCAGGAT AACGTCTCGG AAGCGGTGTC CGGCGTGAAG GGCGAAAACT CGATCAAGCT GTACGGCAAC GATCTGCAGG CGTTGACCGA CACCGCCAAC AAGATCAAGT CGGTGCTGGC GACGGTGCAG GGCGTGCAGG ATCTCGCGGT GTTCACCTCG CTCGGCCAGC CGACCATCCA GATCGATGTC GACCGCGCCC GCGCCGCGCG CTATGGGCTG ACGCCCGGCG ACATCAACGC CACCATCCGC ATCGCGATCG GCGGCGACAG CGCCGGGGAT CTGTACGAAC CGGGCAGCGA CCGGCATTTC CCGATCATTG TTCGTCTGGC GCCGGAATAT CGCAAGAGCG CCGAGGCGAT CCACAATCTG CGGATCGGCG TGCAGGGCCC GAACGGCATC ACGCAGATCC CATTGACCGA AGTCGCTTCG ATCCAGCTCG TGTCCGGCGC CGCCTACATC TATCGCGAAA ATCAGGAGCG CTATCTGCCG ATCAAGTTCT CGGTGCGCGA GCGCGATCTC GGCAGCGCCA TCAAGGAGGC GCAGGACAAG GTTGCGGAAC AGGTCCAGTT GCCGCCGGGT TCGCGTGCCG AATGGGTCGG CGAATTCGGT AATCTGCAGG ACGCGATCAA GCGGCTGTCG ATCGTGGTGC CGATCAGCCT GGTTCTGATC GGCGTGCTGC TGTTCTTCAA TTTCGGCTCC TTCACCGACA CGCTGCTGGC GATGAGCGTG ATTCCGATGG CGATCTTCGG CGGCGTGCTC GGGCTGCTGG TGACCGGCAT CCCGTTCAGC GTGTCGGCTG CAATCGGCTT CATCGCACTG TTCGGCATCG CGGTGATGGA CGGCATCATC ATCCTGTCGC AATACAATCA GCTCATCGAT CAGGGCCTCG ACCGGGTCCG AGCCATCCTC CGCACCGGCG AGTTGCAATT GCGGCCGGTG CTGATGACCT GCGTGGTGGC GGGCGTCGGG TTGTTGCCAG CCGCGGTGTC GAGCGGCATC GGCTCGCAGG TGCAGAAGCC GTTGGCGATC GTGGTGGTCA CCGGGATGAT GCTCGCGCCG GGGGTGATTC TGGTCACGCT GCCGGTGCTG ATCTCCTATT TCTCGCGCCG CCGCCTGGGA TGA
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Protein sequence | MGRLVAIAVN RRFLMVAMFL LVIAGGVVAF NQLNIEAYPD PTPPMVDIVT QSAGLSAEEV ERYITIPIET QVAGIKNLKT IRTISLYGLS DVKLQFSFDY TYDEALQQVL NRLSQLAPLP GNAQPGISPL SPIGEIFRYR LVGPPGYSVL DLKTLQDWVL QRRFRAVPGV IDVTGWGGKT KTYEVQVDFN KLVANGLTLP QVLQAVSNSN INVGGNTVDI GAQSAVVRGV GLIRSIDDLG STMVASSGGN PVLIRDIAKV SVGEKPRLGI AGMNQDDDIV QGIVLMRRGE KSSPTIARVE QTVKAINASG VLPPGVRIER IYDRKDLIDT TTHTVLHNMV VGILLIVFLQ WVFLGDLRSA LIVGATIPFA LFFAVIILVL RGESANLLSV GAIDFGLIVD ATVIMVEAIF RRLSHTTALS AEELSHISAD TVMGMKSHAI LSAAADVSRS IFFAAAIIIA AFLPLFTLSG VEGNIFSPMA KTYAYALAGG LLATFTVTPA LSAIILPAHV KETETLLMRW LHRLYTPLLG WAVANRRLVM AGAVGLVVMT VIATRFLGLE FLPKLEEGNL WVRATLPPTI SLAEGNGYVN QMRKLIATFP EVESVVSQHG RPDDGTDAAG LFNAEFFAPL KPASQWPGSK DKDDLTARML KQLQEKFPGV EFNFSQYLQD NVSEAVSGVK GENSIKLYGN DLQALTDTAN KIKSVLATVQ GVQDLAVFTS LGQPTIQIDV DRARAARYGL TPGDINATIR IAIGGDSAGD LYEPGSDRHF PIIVRLAPEY RKSAEAIHNL RIGVQGPNGI TQIPLTEVAS IQLVSGAAYI YRENQERYLP IKFSVRERDL GSAIKEAQDK VAEQVQLPPG SRAEWVGEFG NLQDAIKRLS IVVPISLVLI GVLLFFNFGS FTDTLLAMSV IPMAIFGGVL GLLVTGIPFS VSAAIGFIAL FGIAVMDGII ILSQYNQLID QGLDRVRAIL RTGELQLRPV LMTCVVAGVG LLPAAVSSGI GSQVQKPLAI VVVTGMMLAP GVILVTLPVL ISYFSRRRLG
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