| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3558 |
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| Symbol | |
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| ID | 3911360 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 4071544 |
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| End bp | 4072962 |
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| Gene Length | 1419 bp |
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| Protein Length | 472 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637885460 |
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| Product | Type I secretion outer membrane protein, TolC |
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| Protein accession | YP_487164 |
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| Protein GI | 86750668 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.445028 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.560368 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTGGT CGTCAGGATT GATTAGCAGC GCCGGTACGA CGGCACGTCG TTCGCTTGCG
GGCGTTTGCG CCGCCGCGAT CAGCCTTGCG CTGACCTTTC CGGTATCCGC CGAGGGACTC
CCCGAAGCGC TCGCGAAAGC CTATCAGACC AATCCGCAAT TGAATGCCGA GCGCGCCCGG
CAGCGCGCGA CCGACGAGAA TGTGCCGGCC GCCCTGTCGG GTTATCGGCC GCAGATCATC
GCAAGTCTCG GCGTCGGTAT GCAGGCGGTG CGGAACCTGC TGCCCGACAA CACCATCCAG
ACCGCAACGC TGAAGCCGTG GACGATCGGC GTGACCGTCA CGCAGAACCT GTTCAACGGT
TTCAGGACAG CCAACAGTGT GCGCGTCGCC GAATTTCAGG TGAAGTCCGG CCGCGAAGCG
TTGCGCAATG TCGGACAGGG CGTGTTGCTC GACGCGGTCA CCGCCTACAC CAACGTGCTC
GCCAACCAGG CCTTGGTTGC GGCCCAGAAG ACCAACGTCG ATTTTCTCAG CCAGACGCTG
GACATCACCA ACAAGCGATT GAACGCCGGC GATGTGACGC CGACCGACAC CGCGCAGGCC
GAAGCGCGGC TCAGCCGCGG CCGCGCCGAT CTCAACGCCG CCGAAGTGAA CCTCGCCGTC
AGCGAGGCCA CCTACGCGCA GGTGATCGGC AATCCGCCGT CGCGGCTCAG CCCAGCCGCG
CCGGTCGACC GGCTGCTGCC TCGCAGCCGT GAGGAAGCGA TCGCGCTGGC GCTGCAAGGC
AATCCCGCAG TGCTGGCGGC GAGCTACGAC GTCGACGTCG CCACCACGAC GATCAAGGTC
GCCGAAGGCA GCCTGCTGCC GAGCGTGACG CTGCAAGGCA ACGCCAGTCG CAGCCGGGAC
ACCGATTCGA CGCTCGGCAC CAAAGGCACC GACCAGGCTT CGATCCTCGG CCAGGTCTCC
GCGCCGATCT ACGACGGCGG ACTCGCCGCC GCGGAGACCC GGCAGTCCAA GGAGATCGCG
GCGCAGAGCC GTCTGGTGCT CGATCAGATC CGCAATCAGT CGCGCACCGC GGCGGTCGGC
GCGTGGGTCA GCAATGAGGG CGCCAAGATC GCCGTCAGCG CGTCGGAAGC CGAAGTGCGC
GCCGCCGAGA TCGCGCTGAA AGGCGTCGGC CGCGAAGCGC AAGGCGGCCA GCGCACCACG
GTCGACGTGC TGAATTCGCA GCAGGACCTC ACGCTCGCCC GCGCGCGCCT GATCGGCGCG
CAGCGCGATC GGGTGATCGC GTCCTACACG CTGCTCAGCG CCATCGGCCG TCTCGACGTC
AAGACGCTGA AGCTCAATAC GCCGGACTAT CTGCCGGATG TTCACTACCA TCAGGTCCGC
GACGCCTGGC ACGGCCTGCG CACGCCGTCG GGTCAGTGA
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| Protein sequence | MAWSSGLISS AGTTARRSLA GVCAAAISLA LTFPVSAEGL PEALAKAYQT NPQLNAERAR
QRATDENVPA ALSGYRPQII ASLGVGMQAV RNLLPDNTIQ TATLKPWTIG VTVTQNLFNG
FRTANSVRVA EFQVKSGREA LRNVGQGVLL DAVTAYTNVL ANQALVAAQK TNVDFLSQTL
DITNKRLNAG DVTPTDTAQA EARLSRGRAD LNAAEVNLAV SEATYAQVIG NPPSRLSPAA
PVDRLLPRSR EEAIALALQG NPAVLAASYD VDVATTTIKV AEGSLLPSVT LQGNASRSRD
TDSTLGTKGT DQASILGQVS APIYDGGLAA AETRQSKEIA AQSRLVLDQI RNQSRTAAVG
AWVSNEGAKI AVSASEAEVR AAEIALKGVG REAQGGQRTT VDVLNSQQDL TLARARLIGA
QRDRVIASYT LLSAIGRLDV KTLKLNTPDY LPDVHYHQVR DAWHGLRTPS GQ
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