| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_3543 |
|---|
| Symbol | |
|---|
| ID | 3911345 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 4053924 |
|---|
| End bp | 4054583 |
|---|
| Gene Length | 660 bp |
|---|
| Protein Length | 219 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637885445 |
|---|
| Product | peptidase C15, pyroglutamyl peptidase I |
|---|
| Protein accession | YP_487149 |
|---|
| Protein GI | 86750653 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2039] Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.532513 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.704301 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGC TGCGCATCCT GATCACCGGG TTCGGCCCGT TTCCCGGTGC GCCGTTCAAT
CCGACGCCGG CGCTGGTCGC GCGGCTGATG AATTTGCGGC GGCCGGCGCT CGATGCGATC
GAGCGCATCG GCCACGTGTT TCCGGTGAGC TATCGCGCGG TGGATGCCGA ACTGCCGGAT
CTCCTGGCGA TGCATCGCCC CGACGCGCTA CTGATGTTCG GCCTCGCCGC CCGCACGCGG
CATCTGCGGA TCGAGACCCG CGCCCGCAAT GCGATCACCA CGCTGTGGCC GGACGCCGAC
CGGATCACGC TGCGCACCGC CTCGATCGCG GCGGGCGAAT CCGCGCGGGT GTTCGGACCA
CATTGCGAAA AGCTCGTCCG CGCCGCACGC GCCACCGGGA TCGACGCAAG GGCCTCGCGC
GACGCCGGCC GCTATCTGTG CAACTATCTG AGCTGGCGTG CGATCGAAGC CACGGCAACG
CCGCACGGCC CCCGCCTCGC CGCCTTCGTC CATGTGCCGC TGACGGCGCG CGATGGGCGG
GCCTGGCCGG GCAGCGCGAT CACCGCCGAC CATCTGGTCG ATGCCGGCGA GGCGATCCTG
CTCGAACTGG TGAAACTGGC GCGCGGCAGA CCGCGCCTCG CTCGGCCTGA TCCGGGTTAA
|
|---|
| Protein sequence | MSALRILITG FGPFPGAPFN PTPALVARLM NLRRPALDAI ERIGHVFPVS YRAVDAELPD
LLAMHRPDAL LMFGLAARTR HLRIETRARN AITTLWPDAD RITLRTASIA AGESARVFGP
HCEKLVRAAR ATGIDARASR DAGRYLCNYL SWRAIEATAT PHGPRLAAFV HVPLTARDGR
AWPGSAITAD HLVDAGEAIL LELVKLARGR PRLARPDPG
|
|---|
| |